Table 1 Overview metagenome shotgun samples
From: Temporal dynamics in microbial soil communities at anthrax carcass sites
Dataset | Time | Raw PE reads | Cleaned PE reads | Cleaned Singleton reads | Average GC-content (%) | GC-content skewness | Average Genome size (Mb) | Genome Equivalents |
|---|---|---|---|---|---|---|---|---|
Carcass 1 | Ctrl0a | 18,736,078 | 17,119,526 | 138,893 | 69.0 | −1.52 | 4.7 | 1679 |
|  | 0 | 18,545,478 | 18,157,853 | 189,906 | 67.7 | −1.34 | 4.2 | 1975 |
|  | 3 | 18,270,652 | 17,901,288 | 155,300 | 60.7 | −0.24 | 3.3 | 2487 |
|  | 7 | 19,794,059 | 19,333,716 | 131,415 | 54.6 | −0.08 | 3.1 | 2819 |
|  | 14 | 18,686,371 | 18,157,423 | 227,754 | 66.4 | −0.97 | 4.0 | 2034 |
|  | 21 | 18,513,371 | 17,999,309 | 141,642 | 67.6 | −1.32 | 4.2 | 1935 |
|  | 30 | 17,526,182 | 16,999,968 | 116,608 | 66.4 | −0.96 | 3.4 | 2237 |
Carcass 2 | Ctrl0 | 20,731,918 | 19,940,019 | 180,050 | 68.8 | −1.51 | 4.9 | 1871 |
|  | 0 | 22,832,502 | 22,263,495 | 251,377 | 68.8 | −1.67 | 4.7 | 2116 |
|  | 3 | 20,693,407 | 20,053,092 | 167,471 | 65.2 | −0.63 | 3.8 | 2386 |
|  | 7 | 17,689,524 | 17,356,265 | 119,172 | 64.8 | −0.85 | 4.1 | 1912 |
|  | 14 | 18,078,980 | 17,079,305 | 168,140 | 67.5 | −1.46 | 4.1 | 1894 |
|  | 21 | 17,591,012 | 17,104,126 | 148,834 | 68.7 | −1.44 | 4.8 | 1615 |
|  | 30 | 16,364,557 | 15,672,082 | 228,390 | 68.1 | −1.33 | 4.7 | 1485 |