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Table 2 Characteristics of samples used in this study

From: A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome

Sample

Intestinal Location

Treatment

Chicken

Salmonella-challenged

Time point (week)

M848A

Cecum

Control

7

Yes

7

M480A

Cecum

Vaccinated

1

No

6

M736A

Cecum

Vaccinated

2

No

9

M572A

Cecum

Vaccinated

3

No

7

M576A

Cecum

Vaccinated

4

No

7

M988A

Cecum

Vaccinated

2

Yes

8

M908A

Cecum

Vaccinated

3

Yes

7

M368A

Cecum

Prebiotics

1

No

5

M452A

Cecum

Prebiotics

1

No

6

M620A

Cecum

Prebiotics

1

No

8

M704A

Cecum

Prebiotics

1

No

9

M540A

Cecum

Prebiotics

2

No

7

M464A

Cecum

Prebiotics

4

No

6

M884A

Cecum

Prebiotics

4

Yes

7