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Fig. 4 | BMC Microbiology

Fig. 4

From: A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome

Fig. 4

a Principal Coordinates Analysis PCoA (Unweighted UniFrac) plots of data generated by the three different platforms, analyzed by different bioinformatics pipelines and colored according to treatment group (Prebiotics, control and Salmonella-vaccinated). PERMANOVA F and P values and ANOSIM R and P values are indicated. b Procrustes analysis of sequencing data from the different platforms analyzed with the QIIME2 (de novo OTU picking plus chimera depletion). M and P values are indicated in the figure

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