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Table 1 Sequence data overview and read-based taxonomic classification

From: Association of coral algal symbionts with a diverse viral community responsive to heat shock

Cond. Rep. Raw reads Retained reads Classified read pairs (total) Classified read pairs (virus) Classified read pairs (bacteria) Classified read pairs (archaea)
Control R1 51,620,924 7,594,944 10,067 1128 8821 118
  R2 119,963,940 22,602,385 48,850 8385 40,163 299
  R3 59,952,956 7,914,680 8514 691 7669 154
16C R1 70,030,018 11,990,261 22,822 1867 12,827 138
  R2 52,277,676 8,772,154 20,585 3031 46,512 282
  R3 51,391,660 7,063,844 9506 680 12,976 176
36C R1 37,937,408 6,074,958 39,082 18,890 20,790 165
  R2 59,809,100 7,266,991 8646 1444 17,398 156
  R3 70,688,052 9,223,296 10,480 1026 8693 133
DS R1 55,769,740 8,276,145 14,525 1560 20,071 121
  R2 104,424,430 18,366,941 56,341 9547 7046 156
  R3 61,080,270 7,776,573 14,460 1308 9322 132
  Total 794,946,174 122,923,172 263,878 49,557 212,288 2030
     Percent 18.78 80.45 0.77
  1. Numbers of raw and retained (i.e., after quality filtering, PhiX and algal symbiont removal) sequence reads, as well as number of taxonomically classified read pairs are provided. Retained sequence reads were used for taxonomic and expression analysis