Skip to main content

Table 1 Species-specific consensus sequence determined from 456 viral genomes

From: Improved detection of genus-specific Alphavirus using a generic TaqMan® assay

Virus

Number of viral genomes used for consensus sequence

Virus

Number of viral genomes used for consensus sequence

CHIKV

188

BFV

4

ONNV

5

BEBV

2

WEEV

12

FMV

3

VEEV

140

HJV

4

EEEV

14

WHAV

2

SINV

23

MIDV

1

RRV

14

NDUV

2

SFV

14

SESV

2

MAYV

3

SPDV

15

GETV

8

  
  1. Clustal alignment of available genomic sequences was performed for each Alphavirus
  2. A consensus sequence was determined for each viral species using Bioedit software
  3. Consensus sequences were then aligned using CHIKV LR2006 sequence as a ruler guide