Table 2 Top 12 functional classification of the DEGs of B. pumilus BA06 during the entire growth curve by RAST analysis
Subsystems | in MM | in GM | ||||||
|---|---|---|---|---|---|---|---|---|
12/04 | 24/12 | 48/24 | 72/48 | 12/04 | 24/12 | 48/24 | 72/48 | |
Carbohydrates | 98 | 2 | 45 | 5 | 79 | 1 | 37 | 22 |
Amino Acids and Derivatives | 42 | 2 | 44 | 1 | 45 | 8 | 29 | 12 |
Motility and Chemotaxis | 55 | 7 | 55 | 5 | 55 | 10 | 34 | 33 |
Cofactor/Vitamin/Prosthetic Group | 28 | 4 | 12 | 0 | 28 | 1 | 15 | 23 |
Clustering-based Subsystems | 25 | 0 | 28 | 0 | 27 | 1 | 42 | 17 |
Dormancy and Sporulation | 20 | 0 | 59 | 0 | 16 | 0 | 34 | 31 |
Cell Wall and Capsule | 16 | 1 | 17 | 2 | 14 | 0 | 10 | 16 |
Iron Acquisition and Metabolism | 18 | 2 | 9 | 0 | 22 | 0 | 14 | 14 |
Stress Response | 16 | 0 | 13 | 2 | 13 | 0 | 15 | 13 |
Nucleosides and Nucleotides | 16 | 1 | 4 | 1 | 16 | 0 | 5 | 7 |
Protein Metabolism | 11 | 1 | 14 | 1 | 10 | 0 | 17 | 8 |
Respiration | 12 | 0 | 6 | 0 | 12 | 0 | 4 | 2 |