Proteomics-based identification of differentially abundant proteins reveals adaptation mechanisms of Xanthomonas citri subsp. citri during Citrus sinensis infection

Moreira, Leandro M.; Soares, Márcia R.; Facincani, Agda P.; Ferreira, Cristiano B.; Ferreira, Rafael M.; Ferro, Maria I. T.; Gozzo, Fábio C.; Felestrino, Érica B.; Assis, Renata A. B.; Garcia, Camila Carrião M.; Setubal, João C.; Ferro, Jesus A.; de Oliveira, Julio C.F.

doi:10.1186/s12866-017-1063-x

Table 1 Differential expression of proteins in infectious conditions related to RS depletion, osmotic control, oxi-nitroreductases, and iron acquisition and metabolism

From: Proteomics-based identification of differentially abundant proteins reveals adaptation mechanisms of Xanthomonas citri subsp. citri during Citrus sinensis infection

SPOT	PROTEIN	Product	Gene name	Expression	XAM1/NB	3DAI/NB	5DAI/NB	CLASS
2	XAC2830	TonB-dependent receptor	fhuA	Up	62.06	144.00	148.00	IRON
3	XAC4368	TonB-dependent receptor	fecA	Up	0.00	8.99	3.16	IRON
4	XAC1301	Catalase	katG	Up	11.52	19.27	35.31	RSd/OSM
5	XAC3201	TonB-dependent receptor	fyuA	Up	2.57	1.56	0.48	IRON
6	XAC2698	NADH-ubiquinone oxidoreductase, NQO3 subunit	nuoG	Up	5.21	13.89	1.78	REDOX
7	XAC2829	Outer membrane hemin receptor	phuR	Up	1.48	156.00	158.00	IRON
20	XAC1434	Nitrous oxidase accessory protein NosD, contains tandem CASH domains	nosD	Up	13.37	54.21	13.10	REDOX
25	XAC4349^a	Bifunctional oxireductase/alginate lyase	algL	Up	2.79	0.12	3.43	REDOX
26	XAC0339	Oxidoreductase	----	Up	4.23	17.89	10.42	REDOX
28	XAC0288	Oxidoreductase	mocA	Up	42.40	27.05	10.87	REDOX
30	XAC4109	Aerobic coproporphyrinogen III oxidase	hemF	Up	3.23	0.24	1.70	RSd/OSM
31	XAC2005	Thioredoxin reductase	trxB	Up	1.90	0.99	2.29	RSd/OSM
32	XAC3103	Glutathione synthetase	gshB	Up	1.09	0.61	2.75	RSd/OSM
35	XAC4009	Arginase	argI	Up	1.34	8.41	11.58	RSd/OSM
38	XAC2783	Thioredoxin	trx	Up	2.93	1.89	2.42	RSd/OSM
45	XAC2936	ABC transporter ATP-binding protein	ynhD	Up	1.04	4.60	4.37	IRON
48	XAC1160	Oxidoreductase	bdcA	Up	0.33	0.31	2.58	REDOX
53	XAC3664	Outer membrane protein	ompW	Up	2.28	4.08	3.36	IRON
58	XAC2386	Superoxidase dismutase	sodM	Up	1.45	1.84	1.75	RSd/OSM
60	XAC0554	Nitroreductase	----	Up	22.22	0.56	0.53	REDOX
61	XAC1149	Bacterioferritin	bfr	Up	23.71	155.00	0.00	IRON
62	XAC3123	Starvation-inducible DNA-binding protein	dps	Up	2.07	2.70	3.04	IRON
64	XAC2369	General stress protein	gsp	Up	6.00	88.95	117.14	RSd/OSM
66	XAC4346	Glutathione peroxidase	btuE	Up	24.25	1.73	13.30	RSd/OSM
67	XAC2932	Protease	pfpI	Up	6.09	11.82	14.43	RSd/OSM
74	XAC2915	Osmotically inducible protein	osmC	Up	0.95	2.89	2.89	RSd/OSM
75	XAC0282	Organic hydroperoxide resistance protein	ohr	Up	5.30	19.40	24.36	RSd/OSM
85	XAC2743	Oar protein	oar	Down	1.81	0.34	0.72	IRON
86	XAC4274	OmpA-related protein	----	Down	1.66	0.27	0.43	IRON
87	XAC4273	OmpA-related protein	----	Down	1.69	0.05	0.88	IRON
88	XAC2742	TonB-dependent receptor	btuB	Down	0.00	0.00	0.05	IRON
89	XAC3444	TonB-dependent receptor	btuB	Down	1.78	0.00	0.00	IRON
91	XAC0823	Outer membrane hemin receptor	phuR	Down	1.17	0.00	0.00	IRON
92	XAC0176	Ferripyoverdine receptor	fpvA	Down	0.00	0.09	1.20	IRON
93	XAC3498	Outer membrane receptor for ferric iron uptake	fhuE	Down	0.40	0.05	0.40	IRON
111	XAC3802	Fe-S oxidoreductase, related to NifB/MoaA family	----	Down	0.12	0.15	0.07	REDOX
128	XAC3354	Outer membrane protein W	ompW	Down	0.00	0.00	0.00	IRON

^aAlso present at A/B/LPS Class

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