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Table 1 Number of genes and amino acids used in the OrthoMCL clustering

From: Insights into the Geobacillus stearothermophilus species based on phylogenomic principles

Subseta Members of group Same length and same sequence Same length and different sequence Cluster lengthb Total number of core genes
   Genes Amino acids Genes Amino acids Genes Amino acids  
A All Geobacillus 1 116 58 7678 390c 81,812 391
B Groups 1 – 6d 7 865 131 19,180 478c 99,197 485
C G. stearothermophilus group 138 19,490 992 277,724 1524c 446,984 1662
  1. aRefer also to Fig. 1
  2. bTo be in an orthologous cluster, genes had to have a length range of 20% across all cluster members, and only one member per strain
  3. cThis number of genes was used in the Neighbor-Net analysis
  4. dRefer to Fig. 1 for strains included in each group
  5. eIncludes strains ATCC 12980, ATCC 7953, LC300, 12AMORI, 22, 53, Sah69, A1, P3, D1, B4109, B4114
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