Table 3 Data analysis of spiked samples
From: Towards diagnostic metagenomics of Campylobacter in fecal samples
Spiking level | Kraken raw | Kraken final | CLARK raw | CLARK final |
|---|---|---|---|---|
Human samples | ||||
0 | 218 | 0 | 198 | 15 |
7.75 × 101 | 134 | 0 | 128 | 6 |
7.75 × 102 | 168 | 0 | 152 | 8 |
7.75 × 103 | 212 | 0 | 195 | 12 |
7.75 × 104 | 203 | 4 | 187 | 15 |
7.75 × 105 | 172 | 0 | 148 | 8 |
7.75 × 106 | 238 | 50 | 227 | 73 |
7.75 × 107 | 1097 | 615 | 1043 | 703 |
Chicken samples | ||||
0 | 234 | 2 | 184 | 12 |
1 × 102 | 256 | 0 | 229 | 12 |
1 × 103 | 217 | 2 | 183 | 11 |
1 × 104 | 794 | 423 | 760 | 531 |
1 × 105 | 569 | 222 | 536 | 290 |
1 × 106 | 5976 | 4141 | 5923 | 5018 |