Skip to main content

Table 3 Relative abundance of core kingdoms/phylum present in rhizosphere eukaryota community determined by ITS sequencing

From: Addition of plant-growth-promoting Bacillus subtilis PTS-394 on tomato rhizosphere has no durable impact on composition of root microbiome

Core Kingdom Relative abundance (%) in Control treatment Relative abundance (%) in PTS-394 treatment
1 d 3 d 7 d 9 d 14 d 1 d 3 d 7 d 9 d 14 d
Fungi 16.24 20.54 5.64 36.52 1.11 17.22 12.10 5.91 9.33 1.53
Viridiplantae 29.79 24.93 81.81 39.59 97.76 58.22 79.23 92.29 81.40 97.37
Metazoa 0.39 0.62 0.05 0.98 0.17 0.63 0.15 0.43 1.09 0.14
no_rank_Eukaryota group 20.37 21.83 6.21 20.69 0.20 22.27 7.93 1.08 7.04 0.94
unclassified_Eukaryota group 0.18 0.20 0.08 0.16 0.00 0.06 0.04 0.03 0.01 0.01
Unclassified group 33.03 31.87 6.21 2.05 0.76 1.59 0.55 0.27 1.12 0.00
Core phylum
Streptophyta 19.87 17.29 74.15 30.06 97.43 18.17 64.02 90.46 70.60 97.32
Chlorophyta 9.91 7.59 7.64 9.39 0.33 40.04 15.20 1.83 10.80 0.05
Ascomycota 2.17 3.98 1.30 8.42 0.13 2.26 1.44 0.59 0.67 0.63
Basidiomycota 1.94 1.83 0.83 2.10 0.17 1.60 4.36 0.94 1.13 0.16
Porifera 0.37 0.49 0.05 0.79 0.06 0.19 0.12 0.42 0.78 0.01
Chytridiomycota 0.18 0.42 0.20 0.58 0.03 0.40 0.19 0.11 0.23 0.07
Nematoda 0.03 0.09 0.00 0.15 0.12 0.41 0.03 0.01 0.11 0.10
no_rank_Eukaryota group 20.37 21.82 6.19 20.68 0.20 22.26 7.93 1.05 7.04 0.94
no_rank_Fungi group 11.19 12.94 3.13 18.86 0.67 12.44 5.75 4.18 6.99 0.66
unclassified_Eukaryota group 0.18 0.20 0.08 0.16 0.00 0.06 0.04 0.03 0.01 0.01
unclassified_Fungi group 0.71 1.30 0.18 6.48 0.10 0.44 0.28 0.08 0.14 0.01
  1. The assay was performed 1, 3, 7, 9, and 14 days after inoculation with PTS-394, Control experiments without PTS-394 were performed at same time points