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Table 1 Taxonomic relationship of B. subtilis PTS-394 based on whole genome analysis

From: Addition of plant-growth-promoting Bacillus subtilis PTS-394 on tomato rhizosphere has no durable impact on composition of root microbiome

query

accession

Z-score

ANIb

ANIm

dDDH (formula 2)

Probability

G + C

>70%

>79%

Bacillus subtilis PTS-394

AWXG00000000

       

reference

        

Bacillus subtilis subtilis ASM74047v1

JPVW01000000

0.99976

98.56

98.85

90.10% [87.8–92.1%]

95.85%

65.49%

0.00%

Bacillus subtilis QH-1

AZQS00000000

0.99976

98.59

98.95

91.10% [88.9–92.9%]

96.15%

66.94%

0.02%

Bacillus subtilis subtilis 168(T)

NC_000964.3

0.99929

98.46

98.85

90.10% [87.8–92%]

95.84%

65.47%

0.18%

Bacillus subtilis subtilis MP9

APMW00000000.1

0.99969

98.41

98.62

87.20% [84.7–89.4%]

94.76%

60.77%

0.09%

Bacillus subtilis B4143

JXLQ00000000

0.99969

98.38

98.65

88.00% [85.5–90.1%]

95.06%

61.99%

0.03%

Bacillus subtilis subtilis RO-NN-1

CP002906.1

0.99953

97.84

98.07

82.90% [80–85.4%]

92.55%

53.1%

0.17%

Bacillus subtilis spizizenii W23

NC_014479.1

0.99895

92.59

92.87

49.30% [46.7–52%]

17.32%

3.61%

0.19%

Bacillus subtilis spizizenii ATCC 6633

ADGS00000000

0.99901

92.49

92.87

49.20% [46.6–51.8%]

17%

3.54%

0.13%

B.subtilis inaquosorum KCTC13429(T)

AMXN00000000

0.99832

92.37

93.05

49.90% [47.3–52.6%]

18.92%

3.93%

0.01%

Bacillus tequilensis KCTC 13622(T)

AYTO00000000

0.99741

91.29

91.83

44.90% [42.3–47.4%]

8%

1.76%

0.16%

Bacillus vallismortis DV1-F-3

AFSH00000000

0.99729

90.47

91.10

42.50% [40–45%]

4.85%

1.14%

0.06%

Bacillus mojavensis KCTC 3706(T)

AYTL00000000

0.99748

86.81

87.58

32.40% [30–34.9%]

0.27%

0.1%

0.03%

Bacillus mojavensis RRC 101

ASJT00000000

0.99731

86.74

87.64

32.40% [30–34.9%]

0.27%

0.1%

0.03%

Bacillus atrophaeus 1942

CP002207.1

0.98582

79.19

83.88

22.00% [19.8–24.5%]

0%

0%

0.48%

Bacillus amyloliquefaciens DSM 7(T)

FN597644.1

0.95303

76.39

83.88

20.40% [18.2–22.8%]

0%

0%

2.39%

Bacillus amyloliquefaciens UCMB-5036

NC_020410.1

0.94889

76.33

84.19

20.50% [18.3–22.9%]

0%

0%

2.9%

Bacillus amyloliquefaciens UCMB-5113

NC_022081.1

0.94919

76.32

84.12

20.50% [18.2–22.9%]

0%

0%

3.01%

Bacillus amyloliquefaciens FZB42(T)

NC_009725.1

0.9508

76.29

84.15

20.50% [18.3–22.9%]

0%

0%

2.78%

Bacillus amyloliquefaciens UCMB-5033

NC_022075.1

0.95049

76.26

84.09

20.40% [18.2–22.8%]

0%

0%

2.49%

Bacillus methylotrophicus SK19.001

AOFO00000000

0.95157

76.21

84.25

20.40% [18.1–22.8%]

0%

0%

2.47%

Bacillus methylotrophicus JS25R

CP009679.1

0.9523

76.16

84.21

20.40% [18.2–22.8%]

0%

0%

2.71%

Bacillus siamensis KCTC 13613(T)

AJVF00000000

0.95296

76.16

84.39

20.60% [18.3–23%]

0%

0%

2.64%

  1. Thresholds supporting subspecies delineation (intraspecific Tetra-nucleotide signature correlation index (Z-score): > 0.999, ANIb and ANIm: >98%, and dDDH: >79%) are indicated in bold letters