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Table 6 UTI89 genes downregulated in J82 BECs. BLAST results of hypothetical proteins are represented in parentheses. Genes located on the UTI89 plasmid are marked in bold

From: DFI-seq identification of environment-specific gene expression in uropathogenic Escherichia coli

Genes downregulated during growth in J82 BECs Protein Number of genes in operon rLogFC
repB replication protein 1 2,011113132
htgA positive regulator for sigma 32 heat shock promoters 1 1,890514455
UTI89_P010 hypothetical protein (iron permease/transporter (membrane protein)) 1 1,861559188
ribF bifunctional riboflavin kinase/FMN adenylyltransferase 1 1,859516233
yaaY hypothetical protein 1 1,848940285
ydiA hypothetical protein 1 1,753697215
gyrB DNA gyrase subunit B 1 1,74780503
rob right origin-binding protein 1 1,738152589
yajK thiamine biosynthesis protein ThiI 1 1,638543917
creA hypothetical protein (protein CreA (Catabolite regulation protein A)) 1 1,635400678
ytfB hypothetical protein (Opacity-associated protein A) 1 1,617894201
UTI89_P053 hypothetical protein 1 1,614324659
yjjX NTPase 1 1,60329406
UTI89_P144 hypothetical protein (putative endonuclease) 1 1,577892223
yccW hypothetical protein (ribosomal RNA large subunit methyltransferase) 1 1,516636602
UTI89_P046; UTI89_P047 hypothetical serine-threonine protein kinase
hypothetical protein
2 1,513872693