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Table 4 BLAST results of hypothetical proteins are represented in parentheses

From: DFI-seq identification of environment-specific gene expression in uropathogenic Escherichia coli

Genes downregulated during growth in human urine compared to LB Protein Number of genes in operon rLogFC
fliF ;
fliG;
fliH;
fliI
flagellar MS-ring protein;
flagellar motor switch protein G;
flagellar assembly protein H;
flagellum-specific ATP synthase
4 2.177048
fliE flagellar hook-basal body protein FliE 1 2.158562
UTI89_C3136 Hypothetical protein (FAD-linked oxidoreductase) 1 1.979745
ybeK Hypothetical protein (hydrolase) 1 1.857649
nadC quinolinate phosphoribosyltransferase 1 1.789156
nagA N-acetylglucosamine-6-phosphate deacetylase 1 1.739815
menE ;
menC;
menB
O-succinylbenzoic acid-CoA ligase;
O-succinylbenzoate synthase;
naphthoate synthase
3 1.731787
galS DNA-binding transcriptional regulator GalS 1 1.715122
UTI89_C0374 Hypothetical protein (nucleoprotein/polynucleotide-associated enzyme) 1 1.701595
fadB multifunctional fatty acid oxidation complex subunit alpha 1 1.682517
ampD ;
ampE
N-acetyl-anhydromuranmyl-L-alanine amidase;
regulatory protein AmpE
2 1.671218
narG ;
narH;
narJ;
narI
respiratory nitrate reductase 1 subunit alpha; respiratory nitrate reductase 1 subunit beta;
nitrate reductase 1 subunit delta;
nitrate reductase 1, cytochrome b(NR) subunit gamma
4 1.630201
lacI lac repressor 1 1.604708
pepQ ;
yigZ
Proline depeptidase;
hypothetical protein
2 1.580097
yiiM Hypothetical protein (6-N-hydroxylaminopurine resistance protein) 1 1.559754
yjeM Transporter YjeM 1 1.536508
purC phosphoribosylaminoimidazole-succinocarboxamide synthase 1 1.528491
ynfK dithiobiotin synthetase 1 1.508037
ybaS Glutaminase 1 1.507194
hlyA hemolysin A 1 1.50293
ybaR copper-transporting P-type ATPase 1 1.501551