Table 4 BLAST results of hypothetical proteins are represented in parentheses
From: DFI-seq identification of environment-specific gene expression in uropathogenic Escherichia coli
Genes downregulated during growth in human urine compared to LB | Protein | Number of genes in operon | rLogFC |
|---|---|---|---|
fliF ; fliG; fliH; fliI | flagellar MS-ring protein; flagellar motor switch protein G; flagellar assembly protein H; flagellum-specific ATP synthase | 4 | 2.177048 |
fliE | flagellar hook-basal body protein FliE | 1 | 2.158562 |
UTI89_C3136 | Hypothetical protein (FAD-linked oxidoreductase) | 1 | 1.979745 |
ybeK | Hypothetical protein (hydrolase) | 1 | 1.857649 |
nadC | quinolinate phosphoribosyltransferase | 1 | 1.789156 |
nagA | N-acetylglucosamine-6-phosphate deacetylase | 1 | 1.739815 |
menE ; menC; menB | O-succinylbenzoic acid-CoA ligase; O-succinylbenzoate synthase; naphthoate synthase | 3 | 1.731787 |
galS | DNA-binding transcriptional regulator GalS | 1 | 1.715122 |
UTI89_C0374 | Hypothetical protein (nucleoprotein/polynucleotide-associated enzyme) | 1 | 1.701595 |
fadB | multifunctional fatty acid oxidation complex subunit alpha | 1 | 1.682517 |
ampD ; ampE | N-acetyl-anhydromuranmyl-L-alanine amidase; regulatory protein AmpE | 2 | 1.671218 |
narG ; narH; narJ; narI | respiratory nitrate reductase 1 subunit alpha; respiratory nitrate reductase 1 subunit beta; nitrate reductase 1 subunit delta; nitrate reductase 1, cytochrome b(NR) subunit gamma | 4 | 1.630201 |
lacI | lac repressor | 1 | 1.604708 |
pepQ ; yigZ | Proline depeptidase; hypothetical protein | 2 | 1.580097 |
yiiM | Hypothetical protein (6-N-hydroxylaminopurine resistance protein) | 1 | 1.559754 |
yjeM | Transporter YjeM | 1 | 1.536508 |
purC | phosphoribosylaminoimidazole-succinocarboxamide synthase | 1 | 1.528491 |
ynfK | dithiobiotin synthetase | 1 | 1.508037 |
ybaS | Glutaminase | 1 | 1.507194 |
hlyA | hemolysin A | 1 | 1.50293 |
ybaR | copper-transporting P-type ATPase | 1 | 1.501551 |