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Table 3 List of predicted GIs and features. The First column provides position for each GI. The second to ninth column denote the first to the sixth feature of all GIs, Y : Yes and N: No. Both the fifth (VF) and sixth (Repeat sequence) featurres were desribed by two columns

From: Identification and analysis of genomic islands in Burkholderia cenocepacia AU 1054 with emphasis on pathogenicity islands

Location

G + C

Integrase

/Transposase

tRNA

HHR1

Confirmed VF

Putative VF

attL2

attR2

Chromosome I

311461.. 333231

0.555

Y

N

N

N

Bcen_0292

1

2

346723.. 356900

0.621

N

Y

Y

N

N

1

1

482937..496366

0.555

N

Y

Y

N

N

4

1

904269..923167

0.626

Y

Y

Y

N

N

0

0

1346581..1357941

0.601

Y

N

N

N

N

0

0

1550123..1571961

0.621

N

N

Y

N

N

0

2

1586748..1648736

0.694

Y

N

N

N

N

0

0

1672260..1684139

0.647

N

N

N

Bcen_1509

N

5

0

1684758..1702085

0.63

Y

N

N

N

N

0

0

1934646..1946682

0.652

Y

Y

N

N

N

0

0

1951043..1963576

0.564

N

Y

Y

N

N

0

1

2805403..2818743

0.576

Y

Y

N

N

N

0

0

2920184..2936821

0.57

Y

Y

Y

N

N

0

0

3158113..3199826

0.591

Y

Y

Y

N

N

1

2

Chromosome II

198434.. 251490

0.571

Y

N

Y

Bcen_3147

Bcen_3169

16

0

1868507..1893764

0.575

Y

N

Y

N

N

0

0

2097603..2136801

0.61

Y

N

Y

 

Bcen_4839-Bcen_4842 Bcen_4845-Bcen_4848 Bcen_4850-Bcen_4854

1

0

2148401..2224557

0.616

Y

N

N

N

N

0

0

2375417..2389212

0.586

Y

N

Y

N

N

0

0

2442732..2454392

0.624

Y

N

Y

N

N

0

0

2571116..2595257

0.616

Y

N

Y

N

N

0

0

  1. 1 HHR: High Ratio of Hypothetical proteins
  2. 2 attL: Direct Repeat in upstream. attR: Direct Repeat in downstream