TY - JOUR AU - Meyer, V. AU - Fiedler, M. AU - Nitsche, B. AU - King, R. PY - 2015 DA - 2015// TI - The cell factory Aspergillus enters the big data era: opportunities and challenges for optimising product formation JO - Adv Biochem Eng Biotechnol VL - 149 ID - Meyer2015 ER - TY - JOUR AU - Richter, L. AU - Wanka, F. AU - Boecker, S. AU - Storm, D. AU - Kurt, T. AU - Vural, Ö. AU - Süßmuth, R. AU - Meyer, V. PY - 2014 DA - 2014// TI - Engineering of Aspergillus niger for the production of secondary metabolites JO - Fungal Biol Biotechnol VL - 1 UR - https://doi.org/10.1186/s40694-014-0004-9 DO - 10.1186/s40694-014-0004-9 ID - Richter2014 ER - TY - JOUR AU - Süssmuth, R. AU - Zobel, S. AU - Boecker, S. AU - Kulke, D. AU - Heimbach, D. AU - Meyer, V. PY - 2015 DA - 2015// TI - Reprogramming the biosynthesis of cyclodepsipeptide synthetases rendering new to nature enniatins and beauvericins JO - Chembiochem VL - 17 ID - Süssmuth2015 ER - TY - JOUR AU - Dave, K. AU - Ahuja, M. AU - Jayashri, T. N. AU - Sirola, R. B. AU - Punekar, N. S. PY - 2012 DA - 2012// TI - A novel selectable marker based on Aspergillus niger arginase expression JO - Enzyme Microb Technol VL - 51 UR - https://doi.org/10.1016/j.enzmictec.2012.04.001 DO - 10.1016/j.enzmictec.2012.04.001 ID - Dave2012 ER - TY - JOUR AU - Unkles, S. E. AU - Campbell, E. I. AU - Carrez, D. AU - Grieve, C. AU - Contreras, R. AU - Fiers, W. AU - Hondel, C. A. AU - Kinghorn, J. R. PY - 1989 DA - 1989// TI - Transformation of Aspergillus niger with the homologous nitrate reductase gene JO - Gene VL - 78 UR - https://doi.org/10.1016/0378-1119(89)90323-5 DO - 10.1016/0378-1119(89)90323-5 ID - Unkles1989 ER - TY - JOUR AU - Buxton, F. P. AU - Gwynne, D. I. AU - Davies, R. W. PY - 1989 DA - 1989// TI - Cloning of a new bidirectionally selectable marker for Aspergillus strains JO - Gene VL - 84 UR - https://doi.org/10.1016/0378-1119(89)90507-6 DO - 10.1016/0378-1119(89)90507-6 ID - Buxton1989 ER - TY - JOUR AU - Hartingsveldt, W. AU - Mattern, I. E. AU - Zeijl, C. M. J. AU - Pouwels, P. H. AU - Hondel, C. A. PY - 1987 DA - 1987// TI - Development of a homologous transformation system for Aspergillus niger based on the pyrG gene JO - Mol Gen Genet MGG VL - 206 UR - https://doi.org/10.1007/BF00326538 DO - 10.1007/BF00326538 ID - Hartingsveldt1987 ER - TY - JOUR AU - Goosen, T. AU - Engelenburg, F. AU - Debets, F. AU - Swart, K. AU - Bos, K. AU - Broek, H. PY - 1989 DA - 1989// TI - Tryptophan auxotrophic mutants in Aspergillus niger: inactivation of the trpC gene by cotransformation mutagenesis JO - Mol Gen Genet VL - 219 UR - https://doi.org/10.1007/BF00261189 DO - 10.1007/BF00261189 ID - Goosen1989 ER - TY - JOUR AU - Lenouvel, F. AU - Vondervoort, P. J. I. AU - Visser, J. PY - 2002 DA - 2002// TI - Disruption of the Aspergillus niger argB gene: a tool for transformation JO - Curr Genet VL - 41 UR - https://doi.org/10.1007/s00294-002-0320-0 DO - 10.1007/s00294-002-0320-0 ID - Lenouvel2002 ER - TY - JOUR AU - Punt, P. J. AU - Hondel, C. A. PY - 1992 DA - 1992// TI - Transformation of filamentous fungi based on hygromycin B and phleomycin resistance markers JO - Methods Enzymol VL - 216 UR - https://doi.org/10.1016/0076-6879(92)16041-H DO - 10.1016/0076-6879(92)16041-H ID - Punt1992 ER - TY - JOUR AU - Kelly, J. M. AU - Hynes, M. J. PY - 1985 DA - 1985// TI - Transformation of Aspergillus niger by the amdS gene of Aspergillus nidulans JO - EMBO J VL - 4 ID - Kelly1985 ER - TY - JOUR AU - Niu, J. AU - Arentshorst, M. AU - Seelinger, F. AU - Ram, A. F. J. AU - Ouedraogo, J. P. PY - 2016 DA - 2016// TI - A set of isogenic auxotrophic strains for constructing multiple gene deletion mutants and parasexual crossings in Aspergillus niger JO - Arch Microbiol VL - 198 UR - https://doi.org/10.1007/s00203-016-1240-6 DO - 10.1007/s00203-016-1240-6 ID - Niu2016 ER - TY - JOUR AU - Forment, J. V. AU - Ramón, D. AU - MacCabe, A. P. PY - 2006 DA - 2006// TI - Consecutive gene deletions in Aspergillus nidulans: application of the Cre/loxP system JO - Curr Genet VL - 50 UR - https://doi.org/10.1007/s00294-006-0081-2 DO - 10.1007/s00294-006-0081-2 ID - Forment2006 ER - TY - JOUR AU - Krappmann, S. AU - Bayram, O. AU - Braus, G. H. PY - 2005 DA - 2005// TI - Deletion and allelic exchange of the Aspergillus fumigatus veA locus via a novel recyclable marker module JO - Eukaryot Cell VL - 4 UR - https://doi.org/10.1128/EC.4.7.1298-1307.2005 DO - 10.1128/EC.4.7.1298-1307.2005 ID - Krappmann2005 ER - TY - JOUR AU - Carvalho, N. D. S. P. AU - Arentshorst, M. AU - Kwon, M. J. AU - Meyer, V. AU - Ram, A. F. J. PY - 2010 DA - 2010// TI - Expanding the ku70 toolbox for filamentous fungi: establishment of complementation vectors and recipient strains for advanced gene analyses JO - Appl Microbiol Biotechnol. VL - 87 UR - https://doi.org/10.1007/s00253-010-2588-1 DO - 10.1007/s00253-010-2588-1 ID - Carvalho2010 ER - TY - JOUR AU - Arentshorst, M. AU - Lagendijk, E. L. AU - Ram, A. F. PY - 2015 DA - 2015// TI - A new vector for efficient gene targeting to the pyrG locus in Aspergillus niger JO - Fungal Biol Biotechnol VL - 2 UR - https://doi.org/10.1186/s40694-015-0012-4 DO - 10.1186/s40694-015-0012-4 ID - Arentshorst2015 ER - TY - JOUR AU - Cairns, T. C. AU - Studholme, D. J. AU - Talbot, N. J. AU - Haynes, K. PY - 2016 DA - 2016// TI - New and improved techniques for the study of pathogenic fungi JO - Trends Microbiol VL - 24 UR - https://doi.org/10.1016/j.tim.2015.09.008 DO - 10.1016/j.tim.2015.09.008 ID - Cairns2016 ER - TY - JOUR AU - Krappmann, S. PY - 2017 DA - 2017// TI - CRISPR-Cas9, the new kid on the block of fungal molecular biology JO - Med Mycol VL - 55 UR - https://doi.org/10.1093/mmy/myw097 DO - 10.1093/mmy/myw097 ID - Krappmann2017 ER - TY - JOUR AU - Matsu-ura, T. AU - Baek, M. AU - Kwon, J. AU - Hong, C. PY - 2015 DA - 2015// TI - Efficient gene editing in Neurospora crassa with CRISPR technology JO - Fungal Biol Biotechnol VL - 2 UR - https://doi.org/10.1186/s40694-015-0015-1 DO - 10.1186/s40694-015-0015-1 ID - Matsu-ura2015 ER - TY - JOUR AU - Liu, R. AU - Chen, L. AU - Jiang, Y. AU - Zhou, Z. AU - Zou, G. PY - 2015 DA - 2015// TI - Efficient genome editing in filamentous fungus Trichoderma reesei using the CRISPR/Cas9 system JO - Cell Discov VL - 1 UR - https://doi.org/10.1038/celldisc.2015.7 DO - 10.1038/celldisc.2015.7 ID - Liu2015 ER - TY - JOUR AU - Nødvig, C. S. AU - Nielsen, J. B. AU - Kogle, M. E. AU - Mortensen, U. H. PY - 2015 DA - 2015// TI - A CRISPR-Cas9 system for genetic engineering of filamentous fungi JO - PLoS ONE VL - 10 UR - https://doi.org/10.1371/journal.pone.0133085 DO - 10.1371/journal.pone.0133085 ID - Nødvig2015 ER - TY - STD TI - Martin RG, Berberich MA, Ames BN, Davis WW, Goldberger RF, Yourno JD. Metabolism of Amino Acids and Amines Part B. In Methods in Enzymology. Volume 17. Elsevier Inc;1971. p. 3–44. [Methods in Enzymology]. ID - ref22 ER - TY - JOUR AU - Kulis-Horn, R. K. AU - Persicke, M. AU - Kalinowski, J. PY - 2014 DA - 2014// TI - Histidine biosynthesis, its regulation and biotechnological application in Corynebacterium glutamicum JO - Microb Biotechnol VL - 7 UR - https://doi.org/10.1111/1751-7915.12055 DO - 10.1111/1751-7915.12055 ID - Kulis-Horn2014 ER - TY - JOUR AU - Berlyn, M. B. PY - 1967 DA - 1967// TI - Gene-enzyme relationships in histidine biosynthesis in Aspergillus nidulans JO - Genetics VL - 57 ID - Berlyn1967 ER - TY - JOUR AU - Busch, S. AU - Hoffmann, B. AU - Valerius, O. AU - Starke, K. AU - Düvel, K. AU - Braus, G. H. PY - 2001 DA - 2001// TI - Regulation of the Aspergillus nidulans hisB gene by histidine starvation JO - Curr Genet VL - 38 UR - https://doi.org/10.1007/s002940000171 DO - 10.1007/s002940000171 ID - Busch2001 ER - TY - JOUR AU - Dietl, A. -. M. AU - Amich, J. AU - Leal, S. AU - Beckmann, N. AU - Binder, U. AU - Beilhack, A. AU - Pearlman, E. AU - Haas, H. PY - 2016 DA - 2016// TI - Histidine biosynthesis plays a crucial role in metal homeostasis and virulence of Aspergillus fumigatus JO - Virulence VL - 7 UR - https://doi.org/10.1080/21505594.2016.1146848 DO - 10.1080/21505594.2016.1146848 ID - Dietl2016 ER - TY - JOUR AU - Meyer, V. AU - Wanka, F. AU - Gent, J. AU - Arentshorst, M. AU - Hondel, C. A. M. J. J. AU - Ram, A. F. J. PY - 2011 DA - 2011// TI - Fungal gene expression on demand: an inducible, tunable, and metabolism-independent expression system for Aspergillus niger JO - Appl Environ Microbiol VL - 77 UR - https://doi.org/10.1128/AEM.02740-10 DO - 10.1128/AEM.02740-10 ID - Meyer2011 ER - TY - CHAP AU - Meyer, V. AU - Ram, A. F. J. AU - Punt, P. J. PY - 2010 DA - 2010// TI - Genetics, genetic manipulation, and approaches to strain improvement of filamentous fungi BT - Manual of Industrial Microbiology and Biotechnology. Volume 1 PB - Wiley CY - NY ID - Meyer2010 ER - TY - BOOK AU - Green, M. R. AU - Sambrook, J. PY - 2012 DA - 2012// TI - Molecular cloning : a laboratory manual. Volume 1-3 PB - Cold Spring Harbor Laboratory Press CY - Cold Spring Harbor ID - Green2012 ER - TY - JOUR AU - Arentshorst, M. AU - Ram, A. F. J. AU - Meyer, V. PY - 2012 DA - 2012// TI - Using non-homologous end-joining-deficient strains for functional gene analyses in filamentous fungi JO - Methods Mol Biol VL - 835 UR - https://doi.org/10.1007/978-1-61779-501-5_9 DO - 10.1007/978-1-61779-501-5_9 ID - Arentshorst2012 ER - TY - JOUR AU - Delmas, S. AU - Llanos, A. AU - Parrou, J. -. L. AU - Kokolski, M. AU - Pullan, S. T. AU - Shunburne, L. AU - Archer, D. B. PY - 2014 DA - 2014// TI - Development of an unmarked gene deletion system for the filamentous fungi Aspergillus niger and Talaromyces versatilis JO - Appl Environ Microbiol VL - 80 UR - https://doi.org/10.1128/AEM.00625-14 DO - 10.1128/AEM.00625-14 ID - Delmas2014 ER - TY - JOUR AU - Ruiter-Jacobs, Y. M. AU - Broekhuijsen, M. AU - Unkles, S. E. AU - Campbell, E. I. AU - Kinghorn, J. R. AU - Contreras, R. AU - Pouwels, P. H. AU - Hondel, C. A. PY - 1989 DA - 1989// TI - A gene transfer system based on the homologous pyrG gene and efficient expression of bacterial genes in Aspergillus oryzae JO - Curr Genet VL - 16 UR - https://doi.org/10.1007/BF00391472 DO - 10.1007/BF00391472 ID - Ruiter-Jacobs1989 ER - TY - JOUR AU - Jørgensen, T. R. AU - Park, J. AU - Arentshorst, M. AU - Welzen, A. M. AU - Lamers, G. AU - Vankuyk, P. A. AU - Damveld, R. A. AU - Hondel, C. A. M. AU - Nielsen, K. F. AU - Frisvad, J. C. AU - Ram, A. F. J. PY - 2011 DA - 2011// TI - The molecular and genetic basis of conidial pigmentation in Aspergillus niger JO - Fungal Genet Biol VL - 48 UR - https://doi.org/10.1016/j.fgb.2011.01.005 DO - 10.1016/j.fgb.2011.01.005 ID - Jørgensen2011 ER - TY - STD TI - Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, Turner G, de Vries RP, Albang R, Albermann K, Andersen MR, Bendtsen JD, Benen JAE, van den Berg M, Breestraat S, Caddick MX, Contreras R, Cornell M, Coutinho PM, Danchin EGJ, Debets AJM, Dekker P, van Dijck PWM, van Dijk A, Dijkhuizen L, Driessen AJM, D’Enfert C, Geysens S, Goosen C, Groot GSP, et al. Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Nat Biotechnol. 2007;25:221–31. ID - ref34 ER - TY - JOUR AU - Jaenisch, R. AU - Bird, A. PY - 2003 DA - 2003// TI - Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals JO - Nat Genet VL - 33 UR - https://doi.org/10.1038/ng1089 DO - 10.1038/ng1089 ID - Jaenisch2003 ER - TY - STD TI - Paege N, Jung S, Schäpe P, Müller-Hagen D, Ouedraogo J-P, Heiderich C, Jedamzick J, Nitsche BM, van den Hondel CA, Ram AF, Meyer V. A transcriptome meta-analysis proposes novel biological roles for the antifungal protein AnAFP in Aspergillus niger. PLoS ONE. 2016;11:e0165755. ID - ref36 ER - TY - JOUR AU - Gooch, V. D. AU - Mehra, A. AU - Larrondo, L. F. AU - Fox, J. AU - Touroutoutoudis, M. AU - Loros, J. J. AU - Dunlap, J. C. PY - 2008 DA - 2008// TI - Fully codon-optimized luciferase uncovers novel temperature characteristics of the Neurospora clock JO - Eukaryot Cell VL - 7 UR - https://doi.org/10.1128/EC.00257-07 DO - 10.1128/EC.00257-07 ID - Gooch2008 ER - TY - JOUR AU - Bos, C. J. AU - Debets, A. J. AU - Swart, K. AU - Huybers, A. AU - Kobus, G. AU - Slakhorst, S. M. PY - 1988 DA - 1988// TI - Genetic analysis and the construction of master strains for assignment of genes to six linkage groups in Aspergillus niger JO - Curr Genet VL - 14 UR - https://doi.org/10.1007/BF00521266 DO - 10.1007/BF00521266 ID - Bos1988 ER - TY - STD TI - Goto S, Bono H, Ogata H, Fujibuchi W, Nishioka T, Sato K, Kanehisa M. Organizing and computing metabolic pathway data in terms of binary relations. Pac Symp Biocomput 1997:175–86. ID - ref39 ER - TY - JOUR AU - Arnaud, M. B. AU - Chibucos, M. C. AU - Costanzo, M. C. AU - Crabtree, J. AU - Inglis, D. O. AU - Lotia, A. AU - Orvis, J. AU - Shah, P. AU - Skrzypek, M. S. AU - Binkley, G. AU - Miyasato, S. R. AU - Wortman, J. R. AU - Sherlock, G. PY - 2010 DA - 2010// TI - The Aspergillus genome database, a curated comparative genomics resource for gene, protein and sequence information for the Aspergillus research community JO - Nucleic Acids Res VL - 38 UR - https://doi.org/10.1093/nar/gkp751 DO - 10.1093/nar/gkp751 ID - Arnaud2010 ER - TY - JOUR AU - Christie, K. R. AU - Weng, S. AU - Balakrishnan, R. AU - Costanzo, M. C. AU - Dolinski, K. AU - Dwight, S. S. AU - Engel, S. R. AU - Feierbach, B. AU - Fisk, D. G. AU - Hirschman, J. E. AU - Hong, E. L. AU - Issel-Tarver, L. AU - Nash, R. AU - Sethuraman, A. AU - Starr, B. AU - Theesfeld, C. L. AU - Andrada, R. AU - Binkley, G. AU - Dong, Q. AU - Lane, C. AU - Schroeder, M. AU - Botstein, D. AU - Cherry, J. M. PY - 2004 DA - 2004// TI - Saccharomyces genome database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms JO - Nucleic Acids Res VL - 32 UR - https://doi.org/10.1093/nar/gkh033 DO - 10.1093/nar/gkh033 ID - Christie2004 ER -