Bacterial and fungal core microbiomes associated with small grain silages during ensiling and aerobic spoilage

BMC Microbiology

Table 2 Taxonomic assignment, number and percent of shared and unique OTUs in oat, triticale and intercropped silages and barley silage respectively after 14 days of aerobic exposure

Item	Phylum	Class	Order	Family	OTU number	OTU %
Shared OTUs between oat, triticale and intercropped silages					85	100
	Firmicutes	Bacilli	Bacillales	Bacillaceae	60	70.59
	Firmicutes	Bacilli	Bacillales	NM	5	5.88
	Firmicutes	Bacilli	Bacillales	Planococcaceae	19	22.36
	Firmicutes	Bacilli	Lactobacillales	Streptococcaceae	1	1.18
Unique barley silage OTUs					114	100
	Actinobacteria	Actinobacteria	Actinomycetales	NS	14	12.28
	Actinobacteria	Thermoleophilia	Solirubrobacterales	NS	2	1.75
	Bacteroidetes	Cytophagia	Cytophagales	NS	2	1.75
	Bacteroidetes	Flavobacteriia	Flavobacteriales	NS	7	6.14
	Bacteroidetes	Sphingobacteriia	Sphingobacteriales	NS	7	6.14
	Firmicutes	Bacilli	Bacillales	NS	2	1.75
	Firmicutes	Bacilli	Lactobacillales	NS	31	27.19
	Proteobacteria	α-proteobacteria	Rhizobiales	NS	11	9.65
	Proteobacteria	α-proteobacteria	Rhodobacterales	NS	3	2.63
	Proteobacteria	α-proteobacteria	Sphingomonadales	NS	6	5.26
	Proteobacteria	β-proteobacteria	Burkholderiales	NS	9	7.89
	Proteobacteria	γ-proteobacteria	Alteromonadales	NS	1	0.88
	Proteobacteria	γ-proteobacteria	Enterobacteriales	NS	6	5.26
	Proteobacteria	γ-proteobacteria	Pseudomonadales	NS	9	7.89
	Proteobacteria	γ-proteobacteria	Xanthomonadales	NS	3	2.63
	Tenericutes	Mollicutes	Acholeplasmatales	NS	1	0.88

ISSN: 1471-2180