Table 2 Overview of Sf3 phage, ORFs, summary of homology searches and annotations

ORF 1

gp1

+

16

426

137

-

-

-

-

ORF 2

gp2

+

441

2099

553

-

-

-

-

ORF 3

gp3

+

2124

3551

476

pfam05133

Phage portal protein_Gp6

129

4.91e-33

ORF 4

gp4

+

3544

4344

267

-

-

-

-

ORF 5

gp5

+

4407

5156

250

-

-

-

-

ORF 6

gp6

+

5176

5565

130

pfam02924

Bacteriophage lambda head decoration protein D

46,5

5.02e-08

ORF 7

gp7

+

5580

6626

349

pfam03864

Phage major capsid protein E

62,35

3.13e-11

ORF 8

gp8

+

6623

6946

108

-

-

-

-

ORF 9

gp9

+

6952

7395

148

pfam09355

Phage protein Gp19

33,61

5.91e-03

ORF 10

gp10

+

7392

7745

118

-

-

-

-

ORF 11

gp11

+

7748

8026

93

-

-

-

-

ORF 12

gp12

+

8026

8427

134

-

-

-

-

ORF 13

gp13

+

8500

9165

222

-

-

-

-

ORF 14

gp14

+

9269

9592

108

-

-

-

-

ORF 15

gp15

+

9637

10065

143

-

-

-

-

ORF 16

gp16

+

10072

13644

1191

pfam03864

Phage major capsid protein E

62,35

3.13e-11

ORF 17

gp17

+

13649

14539

297

-

-

-

-

ORF 18

gp18

+

14539

15684

382

-

-

-

-

ORF 19

gp19

+

15686

16612

309

-

-

-

-

ORF 20

gp20

+

16626

17243

206

-

-

-

-

ORF 21

gp21

+

17253

19277

675

pfam12708

Pectate lyase superfamily protein

73,24

8.54e-15

ORF 22

gp22

+

19359

20186

276

cd06583

Peptidoglycan recognition proteins (PGRPs)

58,45

4.03e-11

ORF 23

gp23

+

20233

20484

84

-

-

-

-

ORF 24

gp24

+

20528

20860

111

COG4467

YabA

34,76

9.25e-04

ORF 25

gp25

+

20908

21546

213

PHA03169

hypothetical protein; Provisional

35,72

5.62e-03

ORF 26

gp26

+

21757

22989

411

cd00093

Helix-turn-helix XRE-family like proteins.

45,24

1.33e-06

ORF 27

gp27

+

23077

23346

90

-

-

-

-

ORF 28

gp28

+

23343

23537

65

-

-

-

-

ORF 29

gp29

+

23534

24052

173

-

-

-

-

ORF 30

gp30

+

24201

24683

161

-

-

-

-

ORF 31

gp31

+

24668

24781

38

-

-

-

-

ORF 32

gp32

+

24774

25223

150

cd00075

Histidine kinase-like ATPases

36,09

4.50e-04

ORF 33

gp33

-

25247

25363

39

-

-

-

-

ORF 34

gp34

+

25319

25381

21

-

-

-

-

ORF 35

gp35

+

25382

26221

280

pfam00730

HhH-GPD superfamily base excision DNA repair protein

47,36

3.71e-07

ORF 36

gp36

+

26181

27680

500

-

-

-

-

ORF 37

gp37

+

27677

28327

217

cd01672

Thymidine monophosphate kinase (TMPK)

112

1.37e-30

ORF 38

gp38

+

28324

28755

144

cd04683

the Nudix hydrolase superfamily

153

3.17e-48

ORF 39

gp39

-

29387

30592

402

-

-

-

-

ORF 40

gp40

-

30712

30963

84

-

-

-

-

ORF 41

gp41

+

30962

31105

48

-

-

-

-

ORF 42

gp42

-

31162

31524

121

cd00093

Helix-turn-helix XRE-family like proteins.

41

1.99e-06

ORF 43

gp43

+

32113

32337

75

-

-

-

-

ORF 44

gp44

+

32425

32778

118

-

-

-

-

ORF 45

gp45

+

32771

33139

123

-

-

-

-

ORF 46

gp46

+

33136

33678

181

-

-

-

-

ORF 47

gp47

+

33675

33947

91

-

-

-

-

ORF 48

gp48

+

33944

34774

277

pfam12705

PD-(D/E)XK nuclease superfamily

34,99

5.68e-03

ORF 49

gp49

+

34777

35838

354

-

-

-

-

ORF 50

gp50

+

35835

36647

271

cd06127

DEDDh 3’–5’ exonuclease domain family

111

4.30e-30

ORF 51

gp51

+

36644

37099

152

-

-

-

-

ORF 52

gp52

+

37096

37713

206

cd00529

Holliday junction resolvases (HJRs)

38,38

3.22e-04

ORF 53

gp53

+

37710

37985

92

-

-

-

-

ORF 54

gp54

+

37991

38428

146

-

-

-

-

ORF 55

gp55

+

38425

38775

117

-

-

-

-

ORF 56

gp56

+

38788

39564

259

-

-

-

-

ORF 57

gp57

+

39567

40202

212

-

-

-

-

ORF 58

gp58

+

40199

40402

68

-

-

-

-

ORF 59

gp59

+

40399

40926

176

-

-

-

-

ORF 60

gp60

+

40923

41120

66

-

-

-

-

ORF 61

gp61

+

41153

41506

118

-

-

-

-

ORF 62

gp62

+

41503

42369

289

-

-

-

-

ORF 63

gp63

+

42366

42692

109

-

-

-

-

ORF 64

gp64

+

42689

42814

42

pfam10969

Protein of unknown function (DUF2771)

35,51

1.35e-04

ORF 65

gp65

+

42811

43368

186

-

-

-

-

ORF 66

gp66

+

43466

44308

281

-

-

-

-

ORF 67

gp67

-

44375

44590

72

pfam02604

Antitoxin Phd_YefM

30,73

5.22e-03

ORF 68

gp68

+

44674

46254

527

-

-

-

-

ORF 69

gp69

+

46345

47619

425

-

-

-

-

ORF 70

gp70

+

47651

47743

31

-

-

-

-

ORF 71

gp71

+

47817

47996

60

-

-

-

-

ORF 72

gp72

+

48073

48510

146

cd00397

DNA breaking-rejoining enzymes

40,54

2.27e-05

ORF 73

gp73

-

49011

49772

254

-

-

-

-

ORF 74

gp74

+

49506

49766

87

-

-

-

-

ORF 75

gp75

+

49841

49996

52

-

-

-

-

ORF 76

gp76

+

49993

50292

100

cd00085

HNH nucleases

38,22

1.45e-05

ORF 77

gp77

+

50587

51171

195

COG4983

Uncharacterized protein

79,98

9.19e-18

ORF 78

gp78

+

51278

51349

24

-

-

-

-

ORF 79

gp79

-

51714

52163

150

-

-

-

-

ORF 80

gp80

-

52167

53399

411

-

-

-

-

ORF 81

gp81

-

53709

54161

151

-

-

-

-

ORF 82

gp82

+

54647

55672

342

pfam06381

Protein of unknown function (DUF1073)

39,22

1.07e-03

ORF 83

gp83

-

55695

55889

65

-

-

-

-

ORF 84

gp84

+

55948

56844

299

TIGR01641

phage putative head morphogenesis protein

59,7

1.40e-11

ORF 85

gp85

-

56884

57198

105

PRK13502

transcriptional activator RhaR

32,72

8.64e-03

ORF 86

gp86

+

57346

57642

99

-

-

-

-

ORF 87

gp87

+

57698

57847

50

-

-

-

-

ORF 88

gp88

+

58134

58682

183

-

-

-

-

ORF 89

gp89

-

58679

59956

426

COG1783

Phage terminase_3

161

6.32e-45

ORF 90

gp90

-

60233

60691

153

-

-

-

-

ORF 91

gp91

-

60684

60932

83

-

-

-

-