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Table 2 Overview of Sf3 phage, ORFs, summary of homology searches and annotations

From: Functional and comparative genome analysis of novel virulent actinophages belonging to Streptomyces flavovirens

ORF no. Product Strand Begin End AA Motif Predicted functions Homology score E-value
ORF 1 gp1 + 16 426 137 - - - -
ORF 2 gp2 + 441 2099 553 - - - -
ORF 3 gp3 + 2124 3551 476 pfam05133 Phage portal protein_Gp6 129 4.91e-33
ORF 4 gp4 + 3544 4344 267 - - - -
ORF 5 gp5 + 4407 5156 250 - - - -
ORF 6 gp6 + 5176 5565 130 pfam02924 Bacteriophage lambda head decoration protein D 46,5 5.02e-08
ORF 7 gp7 + 5580 6626 349 pfam03864 Phage major capsid protein E 62,35 3.13e-11
ORF 8 gp8 + 6623 6946 108 - - - -
ORF 9 gp9 + 6952 7395 148 pfam09355 Phage protein Gp19 33,61 5.91e-03
ORF 10 gp10 + 7392 7745 118 - - - -
ORF 11 gp11 + 7748 8026 93 - - - -
ORF 12 gp12 + 8026 8427 134 - - - -
ORF 13 gp13 + 8500 9165 222 - - - -
ORF 14 gp14 + 9269 9592 108 - - - -
ORF 15 gp15 + 9637 10065 143 - - - -
ORF 16 gp16 + 10072 13644 1191 pfam03864 Phage major capsid protein E 62,35 3.13e-11
ORF 17 gp17 + 13649 14539 297 - - - -
ORF 18 gp18 + 14539 15684 382 - - - -
ORF 19 gp19 + 15686 16612 309 - - - -
ORF 20 gp20 + 16626 17243 206 - - - -
ORF 21 gp21 + 17253 19277 675 pfam12708 Pectate lyase superfamily protein 73,24 8.54e-15
ORF 22 gp22 + 19359 20186 276 cd06583 Peptidoglycan recognition proteins (PGRPs) 58,45 4.03e-11
ORF 23 gp23 + 20233 20484 84 - - - -
ORF 24 gp24 + 20528 20860 111 COG4467 YabA 34,76 9.25e-04
ORF 25 gp25 + 20908 21546 213 PHA03169 hypothetical protein; Provisional 35,72 5.62e-03
ORF 26 gp26 + 21757 22989 411 cd00093 Helix-turn-helix XRE-family like proteins. 45,24 1.33e-06
ORF 27 gp27 + 23077 23346 90 - - - -
ORF 28 gp28 + 23343 23537 65 - - - -
ORF 29 gp29 + 23534 24052 173 - - - -
ORF 30 gp30 + 24201 24683 161 - - - -
ORF 31 gp31 + 24668 24781 38 - - - -
ORF 32 gp32 + 24774 25223 150 cd00075 Histidine kinase-like ATPases 36,09 4.50e-04
ORF 33 gp33 - 25247 25363 39 - - - -
ORF 34 gp34 + 25319 25381 21 - - - -
ORF 35 gp35 + 25382 26221 280 pfam00730 HhH-GPD superfamily base excision DNA repair protein 47,36 3.71e-07
ORF 36 gp36 + 26181 27680 500 - - - -
ORF 37 gp37 + 27677 28327 217 cd01672 Thymidine monophosphate kinase (TMPK) 112 1.37e-30
ORF 38 gp38 + 28324 28755 144 cd04683 the Nudix hydrolase superfamily 153 3.17e-48
ORF 39 gp39 - 29387 30592 402 - - - -
ORF 40 gp40 - 30712 30963 84 - - - -
ORF 41 gp41 + 30962 31105 48 - - - -
ORF 42 gp42 - 31162 31524 121 cd00093 Helix-turn-helix XRE-family like proteins. 41 1.99e-06
ORF 43 gp43 + 32113 32337 75 - - - -
ORF 44 gp44 + 32425 32778 118 - - - -
ORF 45 gp45 + 32771 33139 123 - - - -
ORF 46 gp46 + 33136 33678 181 - - - -
ORF 47 gp47 + 33675 33947 91 - - - -
ORF 48 gp48 + 33944 34774 277 pfam12705 PD-(D/E)XK nuclease superfamily 34,99 5.68e-03
ORF 49 gp49 + 34777 35838 354 - - - -
ORF 50 gp50 + 35835 36647 271 cd06127 DEDDh 3’–5’ exonuclease domain family 111 4.30e-30
ORF 51 gp51 + 36644 37099 152 - - - -
ORF 52 gp52 + 37096 37713 206 cd00529 Holliday junction resolvases (HJRs) 38,38 3.22e-04
ORF 53 gp53 + 37710 37985 92 - - - -
ORF 54 gp54 + 37991 38428 146 - - - -
ORF 55 gp55 + 38425 38775 117 - - - -
ORF 56 gp56 + 38788 39564 259 - - - -
ORF 57 gp57 + 39567 40202 212 - - - -
ORF 58 gp58 + 40199 40402 68 - - - -
ORF 59 gp59 + 40399 40926 176 - - - -
ORF 60 gp60 + 40923 41120 66 - - - -
ORF 61 gp61 + 41153 41506 118 - - - -
ORF 62 gp62 + 41503 42369 289 - - - -
ORF 63 gp63 + 42366 42692 109 - - - -
ORF 64 gp64 + 42689 42814 42 pfam10969 Protein of unknown function (DUF2771) 35,51 1.35e-04
ORF 65 gp65 + 42811 43368 186 - - - -
ORF 66 gp66 + 43466 44308 281 - - - -
ORF 67 gp67 - 44375 44590 72 pfam02604 Antitoxin Phd_YefM 30,73 5.22e-03
ORF 68 gp68 + 44674 46254 527 - - - -
ORF 69 gp69 + 46345 47619 425 - - - -
ORF 70 gp70 + 47651 47743 31 - - - -
ORF 71 gp71 + 47817 47996 60 - - - -
ORF 72 gp72 + 48073 48510 146 cd00397 DNA breaking-rejoining enzymes 40,54 2.27e-05
ORF 73 gp73 - 49011 49772 254 - - - -
ORF 74 gp74 + 49506 49766 87 - - - -
ORF 75 gp75 + 49841 49996 52 - - - -
ORF 76 gp76 + 49993 50292 100 cd00085 HNH nucleases 38,22 1.45e-05
ORF 77 gp77 + 50587 51171 195 COG4983 Uncharacterized protein 79,98 9.19e-18
ORF 78 gp78 + 51278 51349 24 - - - -
ORF 79 gp79 - 51714 52163 150 - - - -
ORF 80 gp80 - 52167 53399 411 - - - -
ORF 81 gp81 - 53709 54161 151 - - - -
ORF 82 gp82 + 54647 55672 342 pfam06381 Protein of unknown function (DUF1073) 39,22 1.07e-03
ORF 83 gp83 - 55695 55889 65 - - - -
ORF 84 gp84 + 55948 56844 299 TIGR01641 phage putative head morphogenesis protein 59,7 1.40e-11
ORF 85 gp85 - 56884 57198 105 PRK13502 transcriptional activator RhaR 32,72 8.64e-03
ORF 86 gp86 + 57346 57642 99 - - - -
ORF 87 gp87 + 57698 57847 50 - - - -
ORF 88 gp88 + 58134 58682 183 - - - -
ORF 89 gp89 - 58679 59956 426 COG1783 Phage terminase_3 161 6.32e-45
ORF 90 gp90 - 60233 60691 153 - - - -
ORF 91 gp91 - 60684 60932 83 - - - -