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Table 1 Overview of Sf1 phage ORFs, summary of homology searches and annotations

From: Functional and comparative genome analysis of novel virulent actinophages belonging to Streptomyces flavovirens

ORF

Product

Strand

Begin

End

AA

Motif

Predicted functions

Homology score

E-value

ORF 1

gp1

+

126

650

175

pfam05119

Terminase_4 superfamily

65,72

1.77e-14

ORF 2

gp2

+

643

2349

569

pfam03354

Terminase_1 superfamily

243

3.32e-73

ORF 3

gp3

+

2376

3785

470

pfam05133

Phage portal protein

147

3.13e-39

ORF 4

gp4

+

3796

4842

349

cd13126

(MATE) proteins

36,9

5.07e-03

ORF 5

gp5

+

4857

5480

208

pfam09787

Golgin subfamily A5

35,58

6.35e-03

ORF 6

gp6

+

5535

6479

315

PHA00665

major capsid protein

42,17

9.33e-05

ORF 7

gp7

+

6661

7194

178

-

-

-

-

ORF 8

gp8

+

7191

7532

114

-

-

-

-

ORF 9

gp9

+

7532

7783

84

PRK14573

bifunctional D-alanyl-alanine synthetase

34,02

2.66e-03

ORF 10

gp10

+

7783

8178

132

-

-

-

-

ORF 11

gp11

+

8168

8740

191

-

-

-

-

ORF 12

gp12

+

8843

9109

89

-

-

-

-

ORF 13

gp13

+

9145

9489

115

-

-

-

-

ORF 14

gp14

+

9493

12630

1046

pfam10145

Phage-related minor tail protein

88,94

1.30e-19

ORF 15

gp15

+

12631

12837

69

-

-

-

-

ORF 16

gp16

+

12896

15148

751

-

-

-

-

ORF 17

gp17

+

15163

16281

373

pfam13550

Putative phage tail protein

43,42

1.33e-05

ORF 18

gp18

+

16281

16538

86

-

-

-

-

ORF 19

gp19

+

16563

17216

218

-

-

-

-

ORF 20

gp20

-

17411

17518

36

-

-

-

-

ORF 21

gp21

+

17716

18126

137

-

-

-

-

ORF 22

gp22

+

18141

19799

553

-

-

-

-

ORF 23

gp23

+

19824

21251

476

pfam05133

Phage portal protein

129

4.91e-33

ORF 24

gp24

+

21244

22044

267

-

-

-

-

ORF 25

gp25

+

22107

22856

250

-

-

-

-

ORF 26

gp26

+

22870

23265

132

pfam02924

Bacteriophage lambda head decoration protein D

47,27

2.61e-08

ORF 27

gp27

+

23280

24326

349

pfam03864

Phage major capsid protein E

62,35

3.13e-11

ORF 28

gp28

+

24323

24646

108

-

-

-

-

ORF 29

gp29

+

24652

25095

148

pfam09355

Phage protein Gp19

33,61

5.91e-03

ORF 30

gp30

+

25092

25445

118

-

-

-

-

ORF 31

gp31

+

25442

25726

95

-

-

-

-

ORF 32

gp32

+

25726

26127

134

-

-

-

-

ORF 33

gp33

+

26200

26865

222

-

-

-

-

ORF 34

gp34

+

26969

27292

108

-

-

-

-

ORF 35

gp35

+

27337

27765

143

-

-

-

-

ORF 36

gp36

+

27772

31344

1191

cd00254

Lytic Transglycosylase (LT)

56,65

1.82e-09

ORF 37

gp37

+

31349

32239

297

-

-

-

-

ORF 38

gp38

+

32239

33384

382

-

-

-

-

ORF 39

gp39

+

33386

34312

309

-

-

-

-

ORF 40

gp40

+

34326

34943

206

-

-

-

-

ORF 41

gp41

+

34953

36977

675

pfam12708

Pectate lyase_3 superfamily protein

73,24

8.54e-15

ORF 42

gp42

+

37059

37886

276

cd06583

Peptidoglycan recognition proteins (PGRPs)

58,45

4.03e-11

ORF 43

gp43

+

37933

38184

84

-

-

-

-

ORF 44

gp44

+

38228

38560

111

COG4467

YabA

34,76

9.25e-04

ORF 45

gp45

-

38602

39129

176

-

-

-

-

ORF 46

gp46

+

39475

40689

405

cd00093

Helix-turn-helix XRE-family like proteins

45,24

1.45e-06

ORF 47

gp47

+

40777

41046

90

-

-

-

-

ORF 48

gp48

+

41043

41237

65

-

-

-

-

ORF 49

gp49

+

41234

41752

173

-

-

-

-

ORF 50

gp50

+

41901

42383

161

-

-

-

-

ORF 51

gp51

+

42383

42481

33

-

-

-

-

ORF 52

gp52

+

42474

42923

150

cd00075

Histidine kinase-like ATPases

36,09

4.50e-04