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Table 1 Overview of Sf1 phage ORFs, summary of homology searches and annotations

From: Functional and comparative genome analysis of novel virulent actinophages belonging to Streptomyces flavovirens

ORF Product Strand Begin End AA Motif Predicted functions Homology score E-value
ORF 1 gp1 + 126 650 175 pfam05119 Terminase_4 superfamily 65,72 1.77e-14
ORF 2 gp2 + 643 2349 569 pfam03354 Terminase_1 superfamily 243 3.32e-73
ORF 3 gp3 + 2376 3785 470 pfam05133 Phage portal protein 147 3.13e-39
ORF 4 gp4 + 3796 4842 349 cd13126 (MATE) proteins 36,9 5.07e-03
ORF 5 gp5 + 4857 5480 208 pfam09787 Golgin subfamily A5 35,58 6.35e-03
ORF 6 gp6 + 5535 6479 315 PHA00665 major capsid protein 42,17 9.33e-05
ORF 7 gp7 + 6661 7194 178 - - - -
ORF 8 gp8 + 7191 7532 114 - - - -
ORF 9 gp9 + 7532 7783 84 PRK14573 bifunctional D-alanyl-alanine synthetase 34,02 2.66e-03
ORF 10 gp10 + 7783 8178 132 - - - -
ORF 11 gp11 + 8168 8740 191 - - - -
ORF 12 gp12 + 8843 9109 89 - - - -
ORF 13 gp13 + 9145 9489 115 - - - -
ORF 14 gp14 + 9493 12630 1046 pfam10145 Phage-related minor tail protein 88,94 1.30e-19
ORF 15 gp15 + 12631 12837 69 - - - -
ORF 16 gp16 + 12896 15148 751 - - - -
ORF 17 gp17 + 15163 16281 373 pfam13550 Putative phage tail protein 43,42 1.33e-05
ORF 18 gp18 + 16281 16538 86 - - - -
ORF 19 gp19 + 16563 17216 218 - - - -
ORF 20 gp20 - 17411 17518 36 - - - -
ORF 21 gp21 + 17716 18126 137 - - - -
ORF 22 gp22 + 18141 19799 553 - - - -
ORF 23 gp23 + 19824 21251 476 pfam05133 Phage portal protein 129 4.91e-33
ORF 24 gp24 + 21244 22044 267 - - - -
ORF 25 gp25 + 22107 22856 250 - - - -
ORF 26 gp26 + 22870 23265 132 pfam02924 Bacteriophage lambda head decoration protein D 47,27 2.61e-08
ORF 27 gp27 + 23280 24326 349 pfam03864 Phage major capsid protein E 62,35 3.13e-11
ORF 28 gp28 + 24323 24646 108 - - - -
ORF 29 gp29 + 24652 25095 148 pfam09355 Phage protein Gp19 33,61 5.91e-03
ORF 30 gp30 + 25092 25445 118 - - - -
ORF 31 gp31 + 25442 25726 95 - - - -
ORF 32 gp32 + 25726 26127 134 - - - -
ORF 33 gp33 + 26200 26865 222 - - - -
ORF 34 gp34 + 26969 27292 108 - - - -
ORF 35 gp35 + 27337 27765 143 - - - -
ORF 36 gp36 + 27772 31344 1191 cd00254 Lytic Transglycosylase (LT) 56,65 1.82e-09
ORF 37 gp37 + 31349 32239 297 - - - -
ORF 38 gp38 + 32239 33384 382 - - - -
ORF 39 gp39 + 33386 34312 309 - - - -
ORF 40 gp40 + 34326 34943 206 - - - -
ORF 41 gp41 + 34953 36977 675 pfam12708 Pectate lyase_3 superfamily protein 73,24 8.54e-15
ORF 42 gp42 + 37059 37886 276 cd06583 Peptidoglycan recognition proteins (PGRPs) 58,45 4.03e-11
ORF 43 gp43 + 37933 38184 84 - - - -
ORF 44 gp44 + 38228 38560 111 COG4467 YabA 34,76 9.25e-04
ORF 45 gp45 - 38602 39129 176 - - - -
ORF 46 gp46 + 39475 40689 405 cd00093 Helix-turn-helix XRE-family like proteins 45,24 1.45e-06
ORF 47 gp47 + 40777 41046 90 - - - -
ORF 48 gp48 + 41043 41237 65 - - - -
ORF 49 gp49 + 41234 41752 173 - - - -
ORF 50 gp50 + 41901 42383 161 - - - -
ORF 51 gp51 + 42383 42481 33 - - - -
ORF 52 gp52 + 42474 42923 150 cd00075 Histidine kinase-like ATPases 36,09 4.50e-04