Table 3 Stool sample analysis

No of OTUs

NA

33

36

81

129

545

1513

No of species

40

32

33

33

39

46

48

Shared with Capillary

NA

27

28

28

31

31

32

Shared in %

67.50%

70%

70%

77.50%

77.50%

80%

Phyla

Genera

Species

Actinobacteria

Bifidobacterium

adolscent

yes

yes

yes

yes

yes

yes

yes

Actinobacteria

Bifidobacterium

bifidum

yes

yes

yes

yes

yes

yes

yes

Actinobacteria

Bifidobacterium

pseudoca

yes

yes

yes

yes

yes

yes

yes

Actinobacteria

Collinsella

aerofaciens

yes

yes

yes

yes

yes

yes

yes

Bacterium

Bacterium

R 2

yes

yes

yes

yes

yes

yes

yes

Bacteroidetes

Bacteroides

uniformis

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Clostridium

baratti

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Clostridium

bartlettii

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Clostridium

clostridiofo

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Clostridium

disporicum

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Clostridium

hathewayi

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Clostridium

leptum

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Clostridium

ramosum

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Clostridium

aff. innocuum CM970

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Coprococcus

comes

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Butyricicoccus

pullicaecorum

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Dorea

formicigenerans

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Eubacterium

cylindroides

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Eubacterium

eligens

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Flavonifractor

plautii

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Megasphaera

elsdenii

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Mitsuokella

jalaludinii

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Roseburia

faecis

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Ruminococcus

gnavus

yes

yes

yes

yes

yes

yes

yes

Bacteroidetes

Parabacteroides

distasoni

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Clostridium

symbiosum

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Catenibacterium

mitsuokai

yes

yes

yes

yes

yes

yes

yes

Firmicutes

Roseburia

hominis

yes

yes

yes

yes

yes

yes

Bacterium

Bacterium

ic1340

yes

yes

yes

yes

Bacterium

Bacterium

New Zealand 4

yes

yes

yes

yes

Bacteroidetes

Alistipes

onderdonkii

yes

yes

yes

yes

Firmicutes

Ruminococcus

bromii

yes

yes

Bacteroidetes

Bacteroides

coprocola

yes

Bacteroidetes

Prevotella

copri

yes

Firmicutes

Clostridium

lituseburense

yes

Firmicutes

Clostridium

xylanolyticus

yes

Firmicutes

Coprococcus

eutactus

yes

Firmicutes

Ruminococcus

albus

yes

Firmicutes

Ruminococcus

flavefacien

yes

Firmicutes

Turicibacter

sanguinis

yes

Bacteroidetes

Alistipes

indistinctus

yes

yes

yes

yes

yes

yes

Firmicutes

Clostridium

stramisolven

yes

yes

yes

yes

yes

yes

Firmicutes

Eubacterium

Tenue

yes

yes

yes

yes

yes

yes

Firmicutes

Faecalibacterium

prausnitzi

yes

yes

yes

yes

yes

yes

Bacteroidetes

Bacteriodes

vulgatus

yes

yes

yes

yes

yes

Bacteroidetes

Bacteroides

plebeius

yes

yes

yes

Firmicutes

Mitsuokella

multacida

yes

yes

yes

Firmicutes

Ruminococcus

torques

yes

yes

yes

Firmicutes

Christensenella

minuta

yes

yes

yes

Firmicutes

Clostridium

aminovalericum

yes

yes

yes

Firmicutes

Clostridium

bolteae

yes

yes

Firmicutes

Clostridium

disporicum

yes

yes

Firmicutes

Clostridium

spiroforme

yes

yes

Firmicutes

Blautia

coccoides

yes

yes

Firmicutes

Coprobacillus

cateniformis

yes

yes

Firmicutes

Lactobacillus

salivarius

yes

Firmicutes

Catabacter

hongkongensis

yes