Skip to main content

Table 6 DNA primers

From: Occurrence, diversity and community structure of culturable atrazine degraders in industrial and agricultural soils exposed to the herbicide in Shandong Province, P.R. China

Target gene

Primera

Nucleotide sequences (5' → 3')

Reference

atzA

atzA250f

TCGCACGGGCGTCAAT

This study

atzA655f

CGCTCCTGCCACTACCA

This study

atzA650r

TGTCACCGCCGTGGTAG

This study

atzA757r

GCGGGACTCATCCCATGAAT

This study

atzA982r

TACGGAGTCATTACTATTCCCGTT

This study

atzB

B1f

AGGGTGTTGAGGTGGTGAAC

[51]

B1r

CACCACTGTGCTGTGGTAGA

[51]

atzB181f

GGGTGTTGAGGTGGTGAACT

This study

atzB426f

ACCAGTACAACTACAGCCGC

This study

atzB681f

TGATTGCCTACCCGGAAACC

This study

atzB316r

TCTTCATCCACCAGGGCAAA

This study

atzB662r

GGTTTCCGGGTAGGCAATCA

This study

atzB919r

CTTCGGCACCCACCAGAAA

This study

atzC

atzCf

GCTCACATGCAGGTACTCCA

[21]

atzCr

TGTACCATATCACCGTTGCCA

[21]

Cf

GCTCACATGCAGGTACTCCA

[51]

C1r

TCCCCCAACTAAATCACAGC

[51]

atzC340f

TGTGATAGAACATGCTCACATGC

This study

atzC552r

TAGCAGGATCAACTCCCCCA

This study

trzN

C190-10

CACCAGCACCTGTACGAAGG

[22]

C190-11

GATTCGAACCATTCCAAACG

[22]

trzN1114f

AATGGCAACCAGGGGATCAG

This study

trzN1271f

GAGCACCTGACCATTCACGA

This study

rrs

63KWf

CAKGCCTWACACATGCAAGTC

[62], this study

1389r

ACGGGCGGTGTGTACAAG

[62], this study

ERIC

ERIC2

AAGTAAGTGACTGGGGTGAGCG

[64]

BOX

BOXA1R

CTACGGCAAGGCGACGCTGACG

[65]

  1. aNumbers in designations of the primers designed in this work are positions of their 3' nucleotides in coding direct sequences of the respective genes: atzA, atzB, atzC from Pseudomonas sp. ADP (GenBank accession no. U66917, regions 34964-36388, 44487-45932, 70219-71430 respectively), and trzN from Nocardioides sp. C190 (GenBank accession no. AF416746); f – forward, r - reverse