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Fig. 3 | BMC Microbiology

Fig. 3

From: Whole genome sequencing of Salmonella Typhimurium illuminates distinct outbreaks caused by an endemic multi-locus variable number tandem repeat analysis type in Australia, 2014

Fig. 3

Minimum spanning tree of SNPs identified from the 62 STM isolates. Each circle represents isolates with indistinguishable genome (by SNPs excluding indels) and the size of circles corresponds to the number of isolates. Numbers above or on the left of the connecting lines between circles are the number of SNPs while the SNPs as numbered in Fig. 2 were listed either below or on the right of the connecting lines. Labelling of isolates is consistent with Fig. 2. The grey colour in the outbreak circles indicates the proportion of environmental isolates and the black colour indicates the isolate from the secondary case. Outbreak A cluster included 24 out of 25 isolates (except 11) and Outbreak M cluster included 17 of 20 of the outbreak isolates (except 42, 44, and 61) shown in Fig. 2

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BMC Microbiology

ISSN: 1471-2180

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