Skip to main content

Table 1 Summary of the diversity indices of different samples from DongChong XiaCao (DCXC; Ophiocordyceps sinensis) and its environmental samples

From: Pyrosequencing analysis revealed complex endogenetic microorganism community from natural DongChong XiaCao and its microhabitat

 

Bacteria

Fungi

Similarity

Sample names

OTU Numbers

Chao1 a

Simpson

Shannon

OTU Numbers

Chao1

Simpson

Shannon

97 %

sclerotia b

1982

3050.38

0.0069

6.23

1709

3638.45

0.0162

5.81

stromata

2914

5409.71

0.0069

6.95

2109

4894.79

0.0120

5.68

external mycelial cortices

4270

9127.36

0.0010

7.90

2450

6611.38

0.0200

5.60

Soil

5809

13855.43

0.0003

8.31

3204

9554.88

0.0071

6.84

95 %

sclerotia

1447

2085.29

0.0097

5.75

1372

2855.18

0.0182

5.53

stromata

2254

3711.34

0.0081

6.45

1639

3681.45

0.0154

5.35

external mycelial cortices

3505

6743.64

0.0016

7.57

1998

4892.88

0.0210

5.40

Soil

4912

10329.53

0.0005

8.05

2722

7445.69

0.0084

6.55

90 %

sclerotia

897

1188.80

0.0182

5.09

956

1926.36

0.0223

5.07

stromata

1341

1984.05

0.0139

5.72

1039

1934.23

0.0181

4.92

external mycelial cortices

2228

3577.16

0.0027

6.88

1391

2861.02

0.0253

5.03

Soil

3216

5724.56

0.0012

7.38

2081

4787.90

0.0100

6.17

  1. a To calculate all the indices, the sequences number in each samples were normalized to the same, with 9042 bacterial 16S rRNA gene sequences and 8585 fungal ITS sequences
  2. b Abbreviation of the samples name: stroma (ZiZuo in Pinyin simplified as stromata), membrane covered around larva (JunPi in Pinyin simplified as external mycelial cortices), larva (ChongTi in Pinyin simplified as sclerotia) and the soil adhering to the surface of the membrane covered DCXC. The detailed image is shown in Fig. 1
Back to article page

BMC Microbiology

ISSN: 1471-2180

Contact us