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Table 2 Proteins up- or down-regulated in a B. subtilis yvmB mutant

From: The MarR-like protein PchR (YvmB) regulates expression of genes involved in pulcherriminic acid biosynthesis and in the initiation of sporulation in Bacillus subtilis

Protein ΔyvmB vs wta Protein description
Carbon metabolism and transport
 GlpK 24,50 Glycerol kinase
 Tkt 16,00 Transketolase
 Pyk 6,25 Pyruvate kinase
 CitB −13,75 Aconitate hydratase
 CitZ* −7,25 Citrate synthase 2
 PtsH −7,25 Phosphocarrier protein HPr of the PTS
 Pgm −5,75 phosphoglycerate mutase
Iron metabolism/electron transport/respiration
 CypX* 24,25 Cytochrome P450, cLL dipeptide oxidase
 Ndh 19,50 NADH dehydrogenase
 SufD 6,25 FeS cluster assembly protein
 YumC 6,00 ferredoxin/flavodoxin reductase
 YjlC −6,00 Putative NADH dehydrogenase
Amino acid/nitrogen/nucleotides metabolism
 PyrG 12,25 CTP synthase (NH3, glutamine)
 MtnK 11,25 Methylthioribose kinase
 RocD 8,00 Ornithine aminotransferase
 PupG −8,00 Purine nucleoside phosphorylase
 OppA −6,75 Oligopeptide-binding protein
Cell wall synthesis/lipid metabolism
 MurAA 8,25 UDP-N-acetylglucosamine 1-carboxyvinyltransferase
 YkuQ 8,25 Similar to tetrahydrodipicolinate succinylase
 PgcA 7,50 Phosphoglucomutase
 FabI −18,50 Enoyl-[acyl-carrier-protein] reductase [NADH]
Translation
 RplL* −41,00 50S ribosomal protein L7/L12
 RpsH −18,00 30S ribosomal protein S8
 ProS −9,25 Proline-tRNA ligase
 ArgS −7,50 Arginyl-tRNA synthetase
Transcription factor and their control
 SalA 5,75 MRP family regulator
Stress response
 CspD 11,25 Cold-shock protein, molecular chaperone
 KatA 8,75 Vegetative catalase
 BrxB −6,00 Bacilliredoxin
Other functions
 YvmA 13,00 Putative permease
 YkkA −9,50 putative Pit accessory protein
 Hbs* −9,50 DNA-binding protein HU 1
  1. aExperiment was performed in four replicates
  2. *Proteins with an asterisk were identified both in the cytosolic and membrane fractions