Table 1 Serotype determination using the S. suis serotyping pipeline
From: Determining Streptococcus suis serotype from short-read whole-genome sequencing data
Serotype | Number of strains with this serotype on the coagglutination test | Number of strains identified in pipeline first pass | Number of strains identified in pipeline second pass | Accuracy After Second Pass |
|---|---|---|---|---|
1/2 | 7 | N/Aa | 7 | 100Â % |
1 | 7 | 14 | 7 | 100Â % |
2 | 7 | 14 | 7 | 100Â % |
3 | 5 | 5 | 5 | 100Â % |
4 | 7 | 7 | 7 | 100Â % |
5 | 7 | 7 | 7 | 100Â % |
6 | 1 | 1 | 1 | 100Â % |
7 | 7 | 7 | 7 | 100Â % |
8 | 6 | 5b | 5b | 83 %b |
9 | 9 | 9 | 9 | 100Â % |
10 | 2 | 2 | 2 | 100Â % |
11 | 1 | 1 | 1 | 100Â % |
12 | 1 | 1 | 1 | 100Â % |
13 | 1 | 1 | 1 | 100Â % |
14 | 7 | N/A | 7 | 100Â % |
15 | 1 | 1 | 1 | 100Â % |
16 | 7 | 7 | 7 | 100Â % |
17 | 2 | 2 | 2 | 100Â % |
18 | 2 | 2 | 2 | 100Â % |
19 | 3 | 3 | 3 | 100Â % |
21 | 2 | 2 | 2 | 100Â % |
23 | 4 | 4 | 4 | 100Â % |
24 | 4 | 4 | 4 | 100Â % |
25 | 1 | 1 | 1 | 100Â % |
27 | 2 | 2 | 2 | 100Â % |
28 | 6 | 6 | 6 | 100Â % |
29 | 2 | 2 | 2 | 100Â % |
30 | 7 | 7 | 7 | 100Â % |
31 | 3 | 3 | 3 | 100Â % |