Skip to main content

Table 4 Summary of good quality sequences and diversity indices of bacteria from different solid waste at species level

From: High-throughput sequencing of 16S rRNA Gene Reveals Substantial Bacterial Diversity on the Municipal Dumpsite

bSamples Valid reads OTUs ACEa Chao1a Shannona InvSimpsona
Dom 3,466,427 26,243 7338 ± 230 6788 ± 244 5 ± 1.0 26.9 ± 0.7
Biom 1,706,442 18,994 8218 ± 249 6756 ± 257 5.1 ± 0.01 54.2 ± 1.3
Riv 926,648 15,025 10,422 ± 283 8219 ± 287 5.6 ± 0.01 58.5 ± 1.2
FecD 2,369,595 16,697 6183 ± 214 5073 ± 226 4.5 ± 0.01 31.2 ± 0.9
  1. OTUs Operational taxonomic units, ACE abundance based coverage estimator
  2. aCalculations were performed using Mothur package with an OTU definition at > 97 % sequence similarity
  3. bSamples: Dom—Domestic solid waste; Biom—Solid biomedical waste; Riv—River sludge; FecD—Faecal material of pigs scavenging on dumpsite