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Table 2 Results of identification by PRA-hsp65, and by rpoB and hsp65 sequencing of 38 mycobacterial isolates recovered from composting chambers

From: Characterization of mycobacteria and mycobacteriophages isolated from compost at the São Paulo Zoo Park Foundation in Brazil and creation of the new mycobacteriophage Cluster U

N

PRA-hsp65

rpoB c

%

hsp65 c

%

14

M. fortuitum 1a

M. fortuitum T (JF346874)

99

M. fortuitum T (AF547833)

100

8

M. fortuitum 2a

M. porcinum T (AY262737)

98

M. houstonense T (DQ987725)

99

2

M. peregrinum 1

M. septicum (HM807423)

99

M. septicum T (AF547873)

99

1

M. peregrinum 3

M. alvei T (AY859697)

99

M. peregrinum T (AF547865)

99

4

M. septicum 1b

M. septicum (HM807423)

99

M. septicum T (AY496142)

99

5

M. kumamotonense 1a

M. kumamotonense T (JN571258)

100

M. kumamotonense T (JF491323)

100

3

M. terrae 1

M. senuense (JN571250)

99

M. algericum T (GU564405)

100

1

novel profile

M. insubricum T (EU022519)

100

M. insubricum T (JF491319)

100

  1. N number of isolated colonies analyzed
  2. atwo isolates from different compost cells were identified by rpoB and hsp65 sequencing
  3. b M. septicum 1, M. peregrinum 2 and M. porcinum 1 share the same PRA-hsp65 pattern
  4. chighest similarity (GenBank accession number)
  5. % similarity Ttype strain