Table 5 Identification of representative Lactobacillus strains by 16S rRNA gene sequence analysis compared to results obtained by 16S-ARDRA and MALDI-TOF MS
Isolate | Source | Identification by 16S rDNA sequence | Identity value | GenBank accession no. | Identification by 16S-ARDRA (% similarity between wild and reference strains, based on Fig. 5) | Identification by MALDI-TOF MS, log(score) |
|---|---|---|---|---|---|---|
10d | chicken | L. salivarius | 99Â % | KR492877 | L. salivarius (100Â %) | L. salivarius 2.162 |
17c | chicken | L. johnsonii | 99Â % | KR492880 | L. johnsonii (100Â %) | L. johnsonii 1.971 |
L. gasseri 1.770 | ||||||
9e | chicken | L. ingluviei | 99Â % | KR492878 | L. ingluviei (100Â %) | L. ingluviei 2.182 |
29c | goose | L. ingluviei | 99Â % | KR492882 | L. ingluviei (98.5Â %) | L. ingluviei 2.018 |
22b | chicken | L. farciminis | 99Â % | KR492881 | L. farciminis (91.5Â %) | L. farciminis 1.88 |
41a | chicken | L. reuteri | 99Â % | KR492883 | L. reuteri (93.5Â %) | L. reuteri 2.026 |
45b | chicken | L. reuteri | 99Â % | KR492885 | L. reuteri (93.5Â %) | L. reuteri 1.900 |
42c | goose | L. mucosae | 100Â % | KR492884 | L. mucosae (99Â %) | L. mucosae 2.121 |