Table 1 Bacterial strains used in this study
From: Evaluation of fliC-d based direct blood PCR assays for typhoid diagnosis
Sl. no. | Name of organism | Strain/sample ID | Result determined by | ||
|---|---|---|---|---|---|
C-PCR | N-PCR | Q-PCR (Cta) | |||
1 | Salmonella Typhi | MTCC 734 | + | + | + (19.1) |
2 | Salmonella Typhi | KOL 38 | + | + | + (20.0) |
3 | Salmonella Paratyphi A | KOL 24 | - | - | - (40.0) |
4 | Salmonella Paratyphi A | MTCC 735 | - | - | - (40.0) |
5 | Salmonella Typhimurium | NCTC 74 | - | - | - (40.0) |
6 | Salmonella Typhimurium | BCH 7332 | - | - | - (40.0) |
7 | Salmonella Enteritidis | BCH 7321 | - | - | - (40.0) |
8 | Salmonella Enteritidis | EVS 111 | - | - | - (40.0) |
9 | Salmonella Worthington | BCH 3008 | - | - | - (37.0) |
10 | Salmonella Worthington | BCH 2770 | - | - | - (40.0) |
11 | Salmonella Weltrevreden | OSS 56 | - | - | - (38.5) |
12 | Salmonella Weltrevreden | OSS 57 | - | - | - (40.0) |
13 | Salmonella Kentucky | EVS 318 | - | - | - (40.0) |
14 | Salmonella Kentucky | EVS 319 | - | - | - (40.0) |
15 | Salmonella Bareilly | EVS 44 | - | - | - (36.9) |
16 | Salmonella Bareilly | EVS 45 | - | - | - (39.1) |
17 | Salmonella Idikan | EVS 30 | - | - | - (40.0) |
18 | Salmonella Idikan | EVS 31 | - | - | - (38.4) |
19 | Salmonella Senftenberg | EVS 100 | - | - | - (36.2) |
20 | Salmonella Virchow | EVS 160 | - | - | - (36.7) |
21 | Escherichia coli | ATCC 35218 | - | - | - (40.0) |
22 | Escherichia coli | U 1953 | - | - | - (40.0) |
23 | Escherichia coli | U 2367 | - | - | - (40.0) |
24 | Escherichia coli | U 2368 | - | - | - (40.0) |
25 | Escherichia coli | BT 68 | - | - | - (40.0) |
26 | Escherichia coli | BT 171 | - | - | - (40.0) |
27 | Klebsiella pneumonia | U 1791 | - | - | - (40.0) |
28 | Klebsiella pneumonia | U 1947 | - | - | - (40.0) |
29 | Klebsiella sp. | P 1837 | - | - | - (40.0) |
30 | Klebsiella sp. | P 1836 | - | - | - (40.0) |
31 | Klebsiella sp. | P 1745 | - | - | - (37.2) |
32 | Acinetobacter sp. | P 1872 | - | - | - (40.0) |
33 | Acinetobacter sp. | JN 27 | - | - | - (40.0) |
34 | Acinetobacter sp. | SP 2 | - | - | - (38.2) |
35 | Acinetobacter sp. | BCR 154 | - | - | - (40.0) |
36 | Acinetobacter sp. | BCR 188 | - | - | - (40.0) |
37 | Shigella flexneri 2a | BCH 7286 | - | - | - (38.2) |
38 | Shigella dysenteriae | BCH 5375 | - | - | - (40.0) |
39 | Shigella boydii | BCH 4087 | - | - | - (40.0) |
40 | Shigella sonnei | BCH 7178 | - | - | - (40.0) |
41 | Citrobacter freundii | NTS 63 | - | - | - (40.0) |