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Table 4 Znet-scores (normalized differential values) of C. termitidis genes encoding putative hydrogenases

From: Transcriptomic and proteomic analyses of core metabolism in Clostridium termitidis CT1112 during growth on α-cellulose, xylan, cellobiose and xylose

   Znet-scores Znet-scores
Locus Locus-description R0 P0 R1 P1 R2 P2
NiFe H2ase       
Cter_0657 Ni,Fe-hydrogenase III large subunit 0.12 −0.25 −0.68 −1.13 −0.05 −0.74
Cter_3893 Ni,Fe-hydrogenase III large subunit −0.03 0.71 −1.19 −0.31 0.06 0.25
Cter_3894 Respiratory-chain NADH dehydrogenase, 30 Kd 0.19 0.91 −1.27 0.24 0.3 1.01
Cter_3895 Ni,Fe-hydrogenase III small subunit −0.02 0.56 −1.32 0.01 0.12 0.52
FeFe H2ase       
Cter_4761 Hydrogenase, Fe-only −0.56   −0.6   −0.91  
Cter_4762 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) −0.38 −0.64 −0.41 −0.75 −0.39 −0.23
Cter_4763 Ferredoxin −0.11   −0.46   1.03  
Cter_4765 NADH-quinone oxidoreductase, E subunit −1.01   −0.25   −0.19  
Cter_4848 Hydrogenase, Fe-only 0.18 −0.24 −0.94 −0.87 −0.98 −0.1
Cter_4849 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) 0.06 −0.25 −1.07 −0.82 −1.2 −0.13
Cter_4850 NADH:ubiquinone oxidoreductase 24 kD subunit 0.03 −0.22 −1.44 −0.88 −0.98 −0.24
Cter_2461 Hydrogenase, Fe-only 0.34   0.52   0.23  
Cter_2462 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) 0.05   −0.19   −0.06  
Cter_2463 NADH:ubiquinone oxidoreductase 24 kD subunit −0.05   −0.04   −0.11  
Cter_2553 Iron only hydrogenase large subunit −0.1 0.62 −0.13 0.61 −0.67 0.26
Cter_3528 Iron only hydrogenase large subunit 0.5   0.04   0.25  
Cter_4457 Hydrogenase, Fe-only 0.69   0.81   −0.01  
Cter_4458 NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) 0.19   1.07   0.27  
Cter_4459 NADH:ubiquinone oxidoreductase 24 kD subunit 0.18   0.46   −0.27  
  1. Normalized transcriptomic Z-scores Rnet are represented as: (i) R0: xylose grown cells – cellobiose grown cells; (ii) R1: α-cellulose grown cells – cellobiose grown cells; and (iii) R2: xylan grown cells – cellobiose grown cells. Normalized proteomic Z-scores Pnet are represented as (i) P0: xylose grown cells – cellobiose grown cells; (ii) P1: α-cellulose grown cells – cellobiose grown cells; and (iii) P2: xylan grown cells – cellobiose grown cells. For any protein or RNA transcripts, a negative value represents higher expression on cellobiose, while a positive value represents higher expression in any of the other corresponding substrate. Bold indicates the bifurcating hydrogenase abundantly expressed under all conditions