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Table 5 The genetic variants found within sub-assemblages of G. duodenalis assemblage B at the gdh gene

From: Multilocus genotyping of Giardia duodenalis isolates from children in Oromia Special Zone, central Ethiopia

sub-assemblages

GenBank accession no

No. of isolates

Nucleotide at position*

282

288

354

375

381

414

447

471

534

558

579

615

642

653

657

660

669

702

756

768

BIV (Ref.)

EF507654

 

C

C

T

C

C

C

G

T

C

C

C

C

T

A

G

A

C

C

G

C

BIV

KT948098

1

*

*

*

*

*

*

*

*

*

*

*

*

*

*

*

*

*

*

*

*

EB8

KT948092

7

T

T

Y

T

*

*

X

*

*

*

*

*

*

*

*

G

*

*

A

*

EB9

KT948093

3

T

T

C

*

*

*

*

*

*

*

*

*

G

*

*

X

*

*

*

Y

EB10

KT948094

3

T

T

Y

*

*

*

X

*

*

Y

*

*

*

*

*

X

*

*

X

*

EB11

KT948095

2

T

T

C

*

*

*

*

*

*

*

*

*

*

*

*

*

*

*

X

*

EB12

KT948096

2

T

T

C

*

*

*

*

*

*

T

*

*

G

*

*

*

*

*

*

*

EB13

KT948097

2

T

T

*

*

T

*

*

C

*

*

*

*

*

*

*

*

T

T

A

*

EB14

KT948099

1

T

T

*

*

*

Y

*

*

*

*

Y

*

G

X

X

*

*

*

*

T

EB15

KT948100

1

T

T

*

*

Y

*

*

*

Y

*

*

Y

G

*

*

*

*

*

*

T

  1. Key: Asterisks (*) indicate nucleotide identity with the reference sequence; X: A/G and Y: C/T indicate overlapping nucleotides
  2. Nucleotide positions are numbered according to the reference (ref.) sub-assemblage BIV partial sequence (GenBank accession number EF507654), with the first nucleotide as position 1
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