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Table 5 The genetic variants found within sub-assemblages of G. duodenalis assemblage B at the gdh gene

From: Multilocus genotyping of Giardia duodenalis isolates from children in Oromia Special Zone, central Ethiopia

sub-assemblages GenBank accession no No. of isolates Nucleotide at position*
282 288 354 375 381 414 447 471 534 558 579 615 642 653 657 660 669 702 756 768
BIV (Ref.) EF507654   C C T C C C G T C C C C T A G A C C G C
BIV KT948098 1 * * * * * * * * * * * * * * * * * * * *
EB8 KT948092 7 T T Y T * * X * * * * * * * * G * * A *
EB9 KT948093 3 T T C * * * * * * * * * G * * X * * * Y
EB10 KT948094 3 T T Y * * * X * * Y * * * * * X * * X *
EB11 KT948095 2 T T C * * * * * * * * * * * * * * * X *
EB12 KT948096 2 T T C * * * * * * T * * G * * * * * * *
EB13 KT948097 2 T T * * T * * C * * * * * * * * T T A *
EB14 KT948099 1 T T * * * Y * * * * Y * G X X * * * * T
EB15 KT948100 1 T T * * Y * * * Y * * Y G * * * * * * T
  1. Key: Asterisks (*) indicate nucleotide identity with the reference sequence; X: A/G and Y: C/T indicate overlapping nucleotides
  2. Nucleotide positions are numbered according to the reference (ref.) sub-assemblage BIV partial sequence (GenBank accession number EF507654), with the first nucleotide as position 1