|
sub-assemblages
|
GenBank accession no
|
No. of isolates
|
Nucleotide at position*
|
|---|
|
165
|
183
|
309
|
324
|
415
|
423
|
519
|
|---|
|
Ass-A
| | | | | | | | | |
|
A3 Ref.
|
AY072724
| |
T
|
A
|
G
|
A
|
T
|
C
|
A
|
|
AII
|
KT948085
|
8
|
*
|
*
|
*
|
*
|
*
|
*
|
*
|
|
A
|
KT948085
|
2
|
*
|
*
|
*
|
*
|
C
|
T
|
*
|
|
Ass-B
| | | | | | | | | |
|
B3 Ref.
|
AY072727
| |
C
|
A
|
C
|
C
|
C
|
A
|
T
|
|
B3 like1
|
KT948083
|
13
|
*
|
*
|
Y
|
*
|
*
|
*
|
*
|
|
B3 like2
|
KT948084
|
9
|
*
|
*
|
*
|
*
|
*
|
*
|
*
|
|
EB6
|
KT948086
|
3
|
*
|
X
|
T
|
*
|
*
|
*
|
Y
|
|
B3 like3
|
KT948088
|
2
|
*
|
*
|
*
|
*
|
*
|
*
|
C
|
|
B3 like4
|
KT948089
|
1
|
T
|
*
|
T
|
*
|
*
|
*
|
*
|
|
EB7
|
KT948090
|
1
|
T
|
*
|
*
|
T
|
*
|
*
|
*
|
- Key: Asterisks (*) indicate nucleotide identity with the reference sequence; X: A/G and Y: C/T indicates overlapping nucleotides
- Nucleotide positions are numbered according to the reference (ref.) sub-assemblages with the first nucleotide as position 1
