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Table 3 The genetic variants found within sub-assemblages of G. duodenalis assemblage B at the tpi gene

From: Multilocus genotyping of Giardia duodenalis isolates from children in Oromia Special Zone, central Ethiopia

sub-assemblages

GenBank accession no

No. of isolates

Nucleotide at position*

25

51

77

148

151

154

184

196

415

490

BIV (Ref.)

AF069560

 

A

A

T

G

T

T

C

A

A

C

B2

KT948101

16

G

*

C

*

C

C

*

G

G

*

B

KT948103

7

G

*

C

A

C

C

*

G

G

*

MB9

KT948104

3

*

*

*

*

*

C

 

G

G

*

WB8

KT948109

1

*

*

*

*

*

*

*

*

G

*

EB1

KT948105

3

G

*

C

*

*

*

*

G

G

*

EB2

KT948106

2

G

*

C

*

C

C

T

G

G

*

EB3.

KT948107

2

*

*

*

*

*

C

*

G

G

*

EB4

KT948108

1

*

G

C

*

C

C

*

G

G

T

EB5

KT948110

1

*

*

Y

*

*

*

*

*

*

*

  1. Key: Asterisks (*) indicate nucleotide identity with the reference sequence; Y: C/T indicates overlapping nucleotides
  2. Nucleotide positions are numbered according to the reference (ref.) sub-assemblage BIV partial sequence (GenBank accession number AF069560), with the first nucleotide as position 20
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