Table 1 Features of the ICEs in Vibrio alginolyticus strains
ICE | Host strain | Sources | Sites and year of isolation | Size (bp) | Identity to IntSXT (%) | Integration site | Resistant genes | Notable variable genes code forb | GenBank accession number |
|---|---|---|---|---|---|---|---|---|---|
ICEValA056-1 | A056 | Litopeneaus vannamei | Zhanjiang, Guangdong, China, 2003 | 89004 | 97 | prfC | strBA, sul2 | type III RM system, diguanylate cyclase, acriflavin resistance protein, membrane-fusion protein | KR231688 |
ICEValA056-2 | 103826 | N a | tRNA-ser | N | type I RM system, Fic family protein, HigA, MosTA, choline uptake protein, mechanosensitive channel regulation, calcium/sodium proton antiporter, oxaloacetate and citrate metabolism, PrrABCD | KR231689 | |||
ICEValE0601 | E0601 | Seawater | Yangjiang, Guangdong, China, 2006 | 106165 | 99 | prfC | N | HipBA, Flp pilus assembly system, P pilus assembly system, type III RM system, threonine efflux protein, choline uptake protein, diguanylate cyclase, DDE endonuclease, mechanosensitive channel regulation, RNA-dependent DNA polymerases | KT072768 |
ICEValHN492 | HN492 | Seawater | Sanyan, Hainan, China, 2008 | 106164 | 99 | prfC | N | KT072769 | |
ICEValHN396 | HN396 | Seawater | Qinzhou, Guangxi, China, 2008 | 86687 | N | tRNA-ser | N | type II RM system, Fic family protein, HigA, diguanylate cyclase, aerotaxis sensor, chemotaxis sensor, DNA recombination-mediator, DDE endonuclease | KT072770 |
ICEValHN437 | HN437 | Seawater | Haikou, Hainan, China, 2008 | 94290 | N | tRNA-ser | N | type I RM system, Fic family protein, HigA, organic hydroperoxide resistance, DDE endonuclease, nucleotide metabolism, phage lysin, rhamnose metabolism, sulfate assimilation, synthesis of capsular polysaccharide | KT072771 |