Table 3 The ten E. coli species-specific genomic regions identified in this study based on a total sequence identity of 90Â %, their location in the K12 reference genome MG1655, the number out of 2324 E. coli genomes each region was found in, and their putative function based on the top scoring BLASTx hit
From: SuperPhy: predictive genomics for the bacterial pathogen Escherichia coli
Region ID | Start bp | End bp | No. genomes | Putative function |
|---|---|---|---|---|
3160548 | 347258 | 346259 | 2238 | Propionate catabolism operon regulatory protein PrpR |
3160296 | 537566 | 536567 | 2256 | 2-hydroxy-3-oxopropionate reductase |
3160113 | 538566 | 537567 | 2248 | Allantoin permease |
3159571 | 541565 | 540567 | 2275 | Purine permease ybbY |
3159389 | 542566 | 541567 | 2268 | Glycerate kinase |
3158844 | 545665 | 544666 | 2261 | Allantoate amidohydrolase |
3158667 | 546665 | 545666 | 2272 | Ureidoglycolate dehydrogenase |
3159808 | 1588200 | 1587201 | 2171 | FimH protein |
3160196 | 4411062 | 4410063 | 2261 | Hypothetical protein |
3158082 | 4456632 | 4457631 | 2074 | Mur ligase family, glutamate ligase domain protein |