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Table 2 Distribution of sequence types of S. aureus and S. pneumoniae carriage obtained from this study

From: High genetic diversity of Staphylococcus aureus strains colonising the nasopharynx of Gambian villagers before widespread use of pneumococcal conjugate vaccines

S. aureus ST S. aureus Allelic profiles S. pneumoniae carriage
  arcC aroE glp gmk pta tpi yqiL Yes No
1 1 1 1 1 1 1 1 1  
5 1 4 1 4 12 1 10 2 2
6 12 4 1 4 12 1 3 2  
8 3 3 1 1 4 4 3 1  
15 13 13 1 1 12 11 13 22 6
25 4 1 4 1 5 5 4 1  
30 2 2 2 2 6 3 2 1  
41 2 2 2 3 6 3 2   1
45 10 14 8 6 10 3 2 1  
72 1 4 1 8 4 4 3 1 1
97 3 1 1 1 1 5 3 1  
121 6 5 6 2 7 14 5 1  
152 46 75 49 44 13 68 60 1 2
199 13 13 1 1 12 1 13 1  
508 10 40 8 6 10 3 2 2 1
509 1 26 28 18 18 33 27 3  
567 10 1 1 1 1 1 1 2  
669 3 1 94 1 29 5 3 1  
707 18 71 6 2 7 58 2 1 1
728 1 3 1 14 11 27 10 1  
730 1 4 1 4 97 1 10 2  
1004 8 163 129 19 6 125 117 1 1
1320 2 2 2 2 6 11 2 1  
1472 2 2 2 2 6 3 162 1  
1972 13 13 149 1 12 11 13   1
1973 1 26 28 18 18 11 27 1  
1974 10 4 1 1 1 1 1 1  
1975 3 1 1 1 1 11 3 1  
1976 13 13 1 1 12 11 27 1  
1977 10 13 1 1 10 11 13 1  
1978 10 40 1 6 220 33 2 1  
1979 1 40 8 6 220 3 10 1  
1980 13 13 14 1 13 11 13   1
1981 13 13 28 1 12 11 13 1  
1982 1 4 1 1 12 5 3 1  
1983 10 40 8 1 10 3 2   1
1984 13 13 1 1 12 3 2 1  
1985 1 26 28 1 18 33 27 1  
1986 3 13 1 1 18 11 3 1  
1987 4 2 2 2 12 11 4   1
1988 10 47 8 26 26 3 2 1  
1989 3 1 14 1 29 5 3 1  
1990 13 1 1 1 12 11 3 1  
1991 3 3 1 1 4 5 3 1  
1992 22 1 8 18 12 4 31 1  
1993 1 13 1 4 12 1 10 1  
1994 1 1 1 4 12 11 10 1  
1995 1 1 4 1 5 5 4 1  
1996 1 3 1 1 11 27 10 1  
1997 13 13 1 1 1 33 13 1  
1998 1 4 1 4 10 1 10 1  
1999 3 1 94 1 1 5 3 1  
2000 4 4 1 4 12 11 3 1  
2001 10 13 1 1 1 11 13 1  
2002 1 1 1 4 5 1 10 1  
2003 1 4 1 4 97 1 100 1  
2004 13 13 1 1 12 11 35   1
2005 1 1 28 18 18 33 162   1
2006 1 26 28 18 18 33 13 1  
Total         100
  1. New alleles and sequence types are Bolded