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Table 2 Distribution of sequence types of S. aureus and S. pneumoniae carriage obtained from this study

From: High genetic diversity of Staphylococcus aureus strains colonising the nasopharynx of Gambian villagers before widespread use of pneumococcal conjugate vaccines

S. aureus ST

S. aureus Allelic profiles

S. pneumoniae carriage

 

arcC

aroE

glp

gmk

pta

tpi

yqiL

Yes

No

1

1

1

1

1

1

1

1

1

 

5

1

4

1

4

12

1

10

2

2

6

12

4

1

4

12

1

3

2

 

8

3

3

1

1

4

4

3

1

 

15

13

13

1

1

12

11

13

22

6

25

4

1

4

1

5

5

4

1

 

30

2

2

2

2

6

3

2

1

 

41

2

2

2

3

6

3

2

 

1

45

10

14

8

6

10

3

2

1

 

72

1

4

1

8

4

4

3

1

1

97

3

1

1

1

1

5

3

1

 

121

6

5

6

2

7

14

5

1

 

152

46

75

49

44

13

68

60

1

2

199

13

13

1

1

12

1

13

1

 

508

10

40

8

6

10

3

2

2

1

509

1

26

28

18

18

33

27

3

 

567

10

1

1

1

1

1

1

2

 

669

3

1

94

1

29

5

3

1

 

707

18

71

6

2

7

58

2

1

1

728

1

3

1

14

11

27

10

1

 

730

1

4

1

4

97

1

10

2

 

1004

8

163

129

19

6

125

117

1

1

1320

2

2

2

2

6

11

2

1

 

1472

2

2

2

2

6

3

162

1

 

1972

13

13

149

1

12

11

13

 

1

1973

1

26

28

18

18

11

27

1

 

1974

10

4

1

1

1

1

1

1

 

1975

3

1

1

1

1

11

3

1

 

1976

13

13

1

1

12

11

27

1

 

1977

10

13

1

1

10

11

13

1

 

1978

10

40

1

6

220

33

2

1

 

1979

1

40

8

6

220

3

10

1

 

1980

13

13

14

1

13

11

13

 

1

1981

13

13

28

1

12

11

13

1

 

1982

1

4

1

1

12

5

3

1

 

1983

10

40

8

1

10

3

2

 

1

1984

13

13

1

1

12

3

2

1

 

1985

1

26

28

1

18

33

27

1

 

1986

3

13

1

1

18

11

3

1

 

1987

4

2

2

2

12

11

4

 

1

1988

10

47

8

26

26

3

2

1

 

1989

3

1

14

1

29

5

3

1

 

1990

13

1

1

1

12

11

3

1

 

1991

3

3

1

1

4

5

3

1

 

1992

22

1

8

18

12

4

31

1

 

1993

1

13

1

4

12

1

10

1

 

1994

1

1

1

4

12

11

10

1

 

1995

1

1

4

1

5

5

4

1

 

1996

1

3

1

1

11

27

10

1

 

1997

13

13

1

1

1

33

13

1

 

1998

1

4

1

4

10

1

10

1

 

1999

3

1

94

1

1

5

3

1

 

2000

4

4

1

4

12

11

3

1

 

2001

10

13

1

1

1

11

13

1

 

2002

1

1

1

4

5

1

10

1

 

2003

1

4

1

4

97

1

100

1

 

2004

13

13

1

1

12

11

35

 

1

2005

1

1

28

18

18

33

162

 

1

2006

1

26

28

18

18

33

13

1

 

Total

       

100

  1. New alleles and sequence types are Bolded