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Table 4 Gene Ontology (GO) categories of Salmonella Typhimurium N-15 transcriptome significantly overrepresented in the mono-culture compared to co-culture with RBL67

From: Bifidobacterium thermophilum RBL67 impacts on growth and virulence gene expression of Salmonella enterica subsp. enterica serovar Typhimurium

GO category p-value Ngenes in category Description of category
Biological process
 GO:044249 1.69E-20 168 cellular biosynthetic process
 GO:009058 2.27E-18 174 biosynthetic process
 GO:010467 1.16E-11 70 gene expression
 GO:009987 2.05E-11 276 cellular process
 GO:044237 1.12E-10 236 cellular metabolic process
 GO:006412 1.07E-09 49 translation
 GO:044238 2.26E-08 227 primary metabolic process
 GO:034645 5.65E-08 74 cellular macromolecule biosynthetic process
 GO:009059 1.43E-07 75 macromolecule biosynthetic process
 GO:044267 2.58E-07 66 cellular protein metabolic process
 GO:006633 1.86E-06 12 fatty acid biosynthetic process
 GO:019538 4.61E-06 82 protein metabolic process
 GO:044260 5.80E-06 118 cellular macromolecule metabolic process
 GO:008299 5.80E-06 12 isoprenoid biosynthetic process
 GO:006720 5.80E-06 12 isoprenoid metabolic process
 GO:008610 7.04E-06 32 lipid biosynthetic process
 GO:008152 1.73E-05 286 metabolic process
 GO:044255 1.80E-05 32 cellular lipid metabolic process
 GO:043170 1.93E-05 138 macromolecule metabolic process
 GO:006629 2.55E-05 34 lipid metabolic process
 GO:006631 4.06E-05 12 fatty acid metabolic process
 GO:048870 4.72E-04 13 cell motility
 GO:051674 4.72E-04 13 localization of cell
 GO:001539 4.72E-04 13 ciliary or flagellar motility
 GO:044283 6.74E-04 62 small molecule biosynthetic process
 GO:006928 8.07E-04 13 cellular component movement
 GO:006350 9.66E-04 9 transcription
 GO:043064 1.53E-03 8 flagellum organization
 GO:009141 2.48E-03 10 nucleoside triphosphate metabolic process
 GO:016070 2.77E-03 30 RNA metabolic process
 GO:009108 3.33E-03 17 coenzyme biosynthetic process
 GO:030030 3.43E-03 8 cell projection organization
 GO:009142 4.02E-03 9 nucleoside triphosphate biosynthetic process
 GO:006351 5.55E-03 7 transcription, DNA-dependent
 GO:040011 5.89E-03 17 locomotion
 GO:044281 8.06E-03 106 small molecule metabolic process
 GO:009296 8.41E-03 6 flagellum assembly
 GO:034641 9.65E-03 117 cellular nitrogen compound metabolic process
 GO:006139 9.87E-03 77 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
 GO:032774 9.87E-03 7 RNA biosynthetic process
 GO:019720 9.87E-03 7 Mo-molybdopterin cofactor metabolic process
 GO:032324 9.87E-03 7 molybdopterin cofactor biosynthetic process
 GO:043545 9.87E-03 7 molybdopterin cofactor metabolic process
 GO:051189 9.87E-03 7 prosthetic group metabolic process
 GO:006777 9.87E-03 7 Mo-molybdopterin cofactor biosynthetic process
 GO:016053 1.01E-02 31 organic acid biosynthetic process
 GO:046394 1.01E-02 31 carboxylic acid biosynthetic process
 GO:009219 1.10E-02 4 pyrimidine deoxyribonucleotide metabolic process
 GO:009394 1.10E-02 4 2′-deoxyribonucleotide metabolic process
 GO:042180 1.26E-02 58 cellular ketone metabolic process
 GO:030031 1.55E-02 6 cell projection assembly
 GO:006732 1.55E-02 20 coenzyme metabolic process
 GO:042559 1.55E-02 7 pteridine and derivative biosynthetic process
 GO:042558 1.55E-02 7 pteridine and derivative metabolic process
 GO:046034 1.55E-02 7 ATP metabolic process
 GO:015985 1.55E-02 7 energy coupled proton transport, down electrochemical gradient
 GO:015986 1.55E-02 7 ATP synthesis coupled proton transport
 GO:006119 1.55E-02 7 oxidative phosphorylation
 GO:006754 1.55E-02 7 ATP biosynthetic process
 GO:044271 1.65E-02 52 cellular nitrogen compound biosynthetic process
 GO:006950 1.72E-02 26 response to stress
 GO:022607 1.93E-02 16 cellular component assembly
 GO:044085 2.28E-02 22 cellular component biogenesis
 GO:009152 2.52E-02 10 purine ribonucleotide biosynthetic process
 GO:009201 2.53E-02 7 ribonucleoside triphosphate biosynthetic process
 GO:009206 2.53E-02 7 purine ribonucleoside triphosphate biosynthetic process
 GO:009145 2.53E-02 7 purine nucleoside triphosphate biosynthetic process
 GO:006807 2.99E-02 121 nitrogen compound metabolic process
 GO:019748 3.10E-02 4 secondary metabolic process
 GO:009234 3.10E-02 4 menaquinone biosynthetic process
 GO:009233 3.10E-02 4 menaquinone metabolic process
 GO:042362 3.10E-02 4 fat-soluble vitamin biosynthetic process
 GO:042371 3.10E-02 4 vitamin K biosynthetic process
 GO:042373 3.10E-02 4 vitamin K metabolic process
 GO:006775 3.10E-02 4 fat-soluble vitamin metabolic process
 GO:009150 3.10E-02 10 purine ribonucleotide metabolic process
 GO:006164 3.35E-02 11 purine nucleotide biosynthetic process
 GO:009165 3.40E-02 15 nucleotide biosynthetic process
 GO:009205 3.58E-02 7 purine ribonucleoside triphosphate metabolic process
 GO:009199 3.58E-02 7 ribonucleoside triphosphate metabolic process
 GO:009144 3.58E-02 7 purine nucleoside triphosphate metabolic process
 GO:019752 3.59E-02 53 carboxylic acid metabolic process
 GO:043436 3.59E-02 53 oxoacid metabolic process
 GO:009211 3.59E-02 3 pyrimidine deoxyribonucleoside triphosphate metabolic process
 GO:009200 3.59E-02 3 deoxyribonucleoside triphosphate metabolic process
 GO:009120 3.59E-02 3 deoxyribonucleoside metabolic process
 GO:046125 3.59E-02 3 pyrimidine deoxyribonucleoside metabolic process
 GO:009221 3.59E-02 3 pyrimidine deoxyribonucleotide biosynthetic process
 GO:009263 3.59E-02 3 deoxyribonucleotide biosynthetic process
 GO:009265 3.59E-02 3 2′-deoxyribonucleotide biosynthetic process
 GO:009260 3.68E-02 10 ribonucleotide biosynthetic process
 GO:006163 3.85E-02 11 purine nucleotide metabolic process
 GO:019438 3.88E-02 12 aromatic compound biosynthetic process
 GO:015992 3.97E-02 8 proton transport
 GO:006818 3.97E-02 8 hydrogen transport
 GO:006082 4.00E-02 54 organic acid metabolic process
 GO:090304 4.05E-02 52 nucleic acid metabolic process
 GO:043648 4.38E-02 9 dicarboxylic acid metabolic process
 GO:016043 4.38E-02 22 cellular component organization
 GO:009259 4.64E-02 10 ribonucleotide metabolic process
 GO:032787 4.92E-02 16 monocarboxylic acid metabolic process
Molecular function
 GO:005198 2.25E-10 39 structural molecule activity
 GO:003735 1.05E-08 32 structural constituent of ribosome
 GO:046983 1.50E-02 10 protein dimerization activity
 GO:003774 2.16E-02 10 motor activity
 GO:016810 2.24E-02 16 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
 GO:016814 3.39E-02 6 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
Cellular component
 GO:044424 7.14E-22 391 intracellular part
 GO:005622 8.72E-21 395 intracellular
 GO:005737 1.19E-16 371 cytoplasm
 GO:043228 7.58E-16 53 non-membrane-bounded organelle
 GO:043232 7.58E-16 53 intracellular non-membrane-bounded organelle
 GO:043229 7.58E-16 57 intracellular organelle
 GO:043226 7.58E-16 57 organelle
 GO:005840 1.95E-10 33 ribosome
 GO:030529 5.54E-10 33 ribonucleoprotein complex
 GO:044444 1.68E-09 41 cytoplasmic part
 GO:032991 2.06E-07 59 macromolecular complex
 GO:019861 1.39E-06 19 flagellum
 GO:009288 1.47E-05 15 bacterial-type flagellum
 GO:044422 3.09E-04 16 organelle part
 GO:033279 9.66E-04 9 ribosomal subunit
 GO:016469 3.31E-03 8 proton-transporting two-sector ATPase complex
 GO:042995 7.19E-03 19 cell projection
 GO:044446 7.85E-03 9 intracellular organelle part
 GO:015934 8.09E-03 5 large ribosomal subunit
 GO:009426 1.60E-02 3 bacterial-type flagellum basal body, distal rod
 GO:009424 1.60E-02 3 bacterial-type flagellum hook
 GO:009317 1.60E-02 3 acetyl-CoA carboxylase complex
 GO:044463 3.10E-02 7 cell projection part
 GO:044461 3.10E-02 7 bacterial-type flagellum part
 GO:044460 3.10E-02 7 flagellum part
 GO:030694 4.73E-02 3 bacterial-type flagellum basal body, rod
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