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Table 3 Gene Ontology (GO) categories of the Salmonella Typhimurium N-15 transcriptome significantly overrepresented in the co-culture with RBL67 compared to mono-culture

From: Bifidobacterium thermophilum RBL67 impacts on growth and virulence gene expression of Salmonella enterica subsp. enterica serovar Typhimurium

GO category

p-value

Ngenes in category

Description of category

Biological process

 GO:051234

4.77E-28

281

establishment of localization

 GO:006810

4.77E-28

281

transport

 GO:051179

6.29E-25

281

localization

 GO:030254

8.34E-15

42

protein secretion by the type III secretion system

 GO:051704

1.80E-14

47

multi-organism process

 GO:051701

3.20E-12

35

interaction with host

 GO:044419

3.20E-12

35

interspecies interaction between organisms

 GO:044403

3.20E-12

35

symbiosis, encompassing mutualism through parasitism

 GO:008643

8.15E-11

52

carbohydrate transport

 GO:046903

4.51E-10

49

secretion

 GO:032940

4.51E-10

49

secretion by cell

 GO:009306

4.51E-10

49

protein secretion

 GO:052047

5.68E-10

26

interaction with other organism via secreted substance involved in symbiotic interaction

 GO:052049

5.68E-10

26

interaction with host via protein secreted by type III secretion system

 GO:052048

5.68E-10

26

interaction with host via secreted substance involved in symbiotic interaction

 GO:052210

5.68E-10

26

interaction with other organism via protein secreted by type III secretion system involved in symbiotic interaction

 GO:044046

5.68E-10

26

interaction with host via substance released outside of symbiont

 GO:051649

4.63E-09

49

establishment of localization in cell

 GO:051641

8.25E-09

49

cellular localization

 GO:009405

9.76E-08

26

pathogenesis

 GO:015031

2.55E-06

49

protein transport

 GO:045184

2.55E-06

49

establishment of protein localization

 GO:033036

2.96E-06

50

macromolecule localization

 GO:008104

3.67E-06

49

protein localization

 GO:009401

8.19E-06

33

phosphoenolpyruvate-dependent sugar phosphotransferase system

 GO:007047

2.10E-04

12

cellular cell wall organization

 GO:045229

2.10E-04

12

external encapsulating structure organization

 GO:071555

7.60E-04

12

cell wall organization

 GO:009242

2.19E-03

7

colanic acid biosynthetic process

 GO:052126

2.19E-03

7

movement in host environment

 GO:052192

2.19E-03

7

movement in environment of other organism involved in symbiotic interaction

 GO:044409

2.19E-03

7

entry into host

 GO:046377

2.19E-03

7

colanic acid metabolic process

 GO:051828

2.19E-03

7

entry into other organism involved in symbiotic interaction

 GO:022610

3.83E-03

17

biological adhesion

 GO:007155

3.83E-03

17

cell adhesion

 GO:030001

6.91E-03

33

metal ion transport

 GO:006814

8.26E-03

16

sodium ion transport

 GO:009235

1.23E-02

14

cobalamin metabolic process

 GO:009236

1.23E-02

14

cobalamin biosynthetic process

 GO:015891

2.34E-02

5

siderophore transport

 GO:019184

2.34E-02

5

nonribosomal peptide biosynthetic process

 GO:006811

2.34E-02

47

ion transport

 GO:015672

2.61E-02

27

monovalent inorganic cation transport

 GO:006812

3.45E-02

37

cation transport

 GO:006778

4.86E-02

16

porphyrin metabolic process

 GO:006779

4.86E-02

16

porphyrin biosynthetic process

Molecular function

 GO:005215

4.79E-20

215

transporter activity

 GO:015144

1.57E-09

39

carbohydrate transmembrane transporter activity

 GO:022892

1.31E-08

111

substrate-specific transporter activity

 GO:022891

9.42E-08

99

substrate-specific transmembrane transporter activity

 GO:051119

9.81E-08

34

sugar transmembrane transporter activity

 GO:022857

1.61E-07

107

transmembrane transporter activity

 GO:008324

1.82E-07

64

cation transmembrane transporter activity

 GO:005402

1.79E-06

29

cation:sugar symporter activity

 GO:015075

5.82E-06

70

ion transmembrane transporter activity

 GO:015291

6.89E-06

44

secondary active transmembrane transporter activity

 GO:015294

6.89E-06

34

solute:cation symporter activity

 GO:015293

6.89E-06

34

symporter activity

 GO:015295

6.89E-06

27

solute:hydrogen symporter activity

 GO:005351

6.89E-06

27

sugar:hydrogen symporter activity

 GO:022804

5.84E-05

71

active transmembrane transporter activity

 GO:015082

6.07E-03

13

di-, tri-valent inorganic cation transmembrane transporter activity

 GO:046873

7.20E-03

23

metal ion transmembrane transporter activity

 GO:022890

9.53E-03

28

inorganic cation transmembrane transporter activity

 GO:015149

1.06E-02

8

hexose transmembrane transporter activity

 GO:015145

1.06E-02

8

monosaccharide transmembrane transporter activity

 GO:015343

2.20E-02

5

siderophore-iron transmembrane transporter activity

 GO:042927

2.20E-02

5

siderophore transporter activity

 GO:005381

2.59E-02

8

iron ion transmembrane transporter activity

 GO:046915

2.59E-02

11

transition metal ion transmembrane transporter activity

 GO:042879

2.59E-02

6

aldonate transmembrane transporter activity

 GO:015128

2.59E-02

6

gluconate transmembrane transporter activity

 GO:005506

3.93E-02

16

iron ion binding

 GO:046943

4.82E-02

26

carboxylic acid transmembrane transporter activity

 GO:005342

4.82E-02

26

organic acid transmembrane transporter activity

Cellular component

 GO:016020

6.15E-12

381

membrane

 GO:030257

3.05E-10

26

type III protein secretion system complex

 GO:005886

2.84E-08

314

plasma membrane

 GO:044425

5.28E-06

129

membrane part

 GO:016021

5.28E-06

124

integral to membrane

 GO:031224

5.28E-06

124

intrinsic to membrane

 GO:009279

4.20E-05

47

cell outer membrane

 GO:019867

3.67E-04

47

outer membrane

 GO:043234

4.76E-04

50

protein complex

 GO:009289

9.12E-04

15

pilus

 GO:044462

2.45E-03

104

external encapsulating structure part

 GO:043190

3.32E-02

4

ATP-binding cassette (ABC) transporter complex