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Table 2 Bifidobacterium thermophilum RBL67 genes higher expressed in mono-culture compared to co-culture with N-15

From: Bifidobacterium thermophilum RBL67 impacts on growth and virulence gene expression of Salmonella enterica subsp. enterica serovar Typhimurium

Locus tag

Function

logFCa

logCPMb

FDRc

D805_0063

FIG 00519111: hypothetical protein

1.76

5.67

1.8E-12

D805_0064

HTH domain protein

2.18

3.98

4.1E-09

D805_0075

hypothetical protein

1.04

5.15

0.00011

D805_0178

Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)

1.21

7.11

0.04089

D805_0341

Transcriptional regulator, GntR family domain/Aspartate aminotransferase (EC 2.6.1.1)

1.93

3.72

0.02045

D805_0345

Manganese transport protein MntH

1.84

3.71

0.04055

D805_0351

Glycosyl transferase, group 2 family protein

1.49

4.48

0.00041

D805_0352

Glycosyltransferase (EC:2.4.1.-)

1.74

4.96

1.3E-07

D805_0354

glycosyl transferase, group 1 family protein

2.07

4.79

3.0E-10

D805_0355

hypothetical protein

1.34

6.14

4.5E-06

D805_0356

Glycosyltransferase (EC 2.4.1.-)

2.14

4.96

1.5E-15

D805_0512

hypothetical protein

2.01

2.39

0.03026

D805_0524

D-lactate dehydrogenase (EC 1.1.1.28)

2.85

3.15

0.00049

D805_0525

Aspartate aminotransferase (EC 2.6.1.1)

1.91

3.11

0.01352

D805_0652

Oligopeptide transport system permease protein OppC (EC 3.A.1.5.1)

2.25

2.47

0.00227

D805_0656

hypothetical protein

1.57

3.01

0.01267

D805_0665

hypothetical protein

1.18

5.85

2.0E-05

D805_0693

Acetyltransferase, GNAT family

2.23

6.96

2.7E-31

D805_0694

hypothetical protein

2.80

3.46

1.5E-14

D805_0698

hypothetical protein

1.19

4.02

0.00369

D805_0837

putative TraA-like conjugal transfer protein

2.75

3.13

0.00038

D805_0885

Ferric iron ABC transporter, iron-binding protein

1.63

2.52

0.00624

D805_0928

hypothetical protein

1.90

2.59

0.00374

D805_0948

hypothetical protein

2.08

2.96

0.00118

D805_1220

hypothetical protein

2.60

3.03

0.00015

D805_1313

Methionine ABC transporter permease protein

1.52

2.03

0.04091

D805_1771

hypothetical protein

1.01

4.56

0.01571

  1. a logFC log2 fold change, b logCPM log2 counts per million, c FDR false discovery rate
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BMC Microbiology

ISSN: 1471-2180

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