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Table 2 Bifidobacterium thermophilum RBL67 genes higher expressed in mono-culture compared to co-culture with N-15

From: Bifidobacterium thermophilum RBL67 impacts on growth and virulence gene expression of Salmonella enterica subsp. enterica serovar Typhimurium

Locus tag Function logFCa logCPMb FDRc
D805_0063 FIG 00519111: hypothetical protein 1.76 5.67 1.8E-12
D805_0064 HTH domain protein 2.18 3.98 4.1E-09
D805_0075 hypothetical protein 1.04 5.15 0.00011
D805_0178 Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) 1.21 7.11 0.04089
D805_0341 Transcriptional regulator, GntR family domain/Aspartate aminotransferase (EC 2.6.1.1) 1.93 3.72 0.02045
D805_0345 Manganese transport protein MntH 1.84 3.71 0.04055
D805_0351 Glycosyl transferase, group 2 family protein 1.49 4.48 0.00041
D805_0352 Glycosyltransferase (EC:2.4.1.-) 1.74 4.96 1.3E-07
D805_0354 glycosyl transferase, group 1 family protein 2.07 4.79 3.0E-10
D805_0355 hypothetical protein 1.34 6.14 4.5E-06
D805_0356 Glycosyltransferase (EC 2.4.1.-) 2.14 4.96 1.5E-15
D805_0512 hypothetical protein 2.01 2.39 0.03026
D805_0524 D-lactate dehydrogenase (EC 1.1.1.28) 2.85 3.15 0.00049
D805_0525 Aspartate aminotransferase (EC 2.6.1.1) 1.91 3.11 0.01352
D805_0652 Oligopeptide transport system permease protein OppC (EC 3.A.1.5.1) 2.25 2.47 0.00227
D805_0656 hypothetical protein 1.57 3.01 0.01267
D805_0665 hypothetical protein 1.18 5.85 2.0E-05
D805_0693 Acetyltransferase, GNAT family 2.23 6.96 2.7E-31
D805_0694 hypothetical protein 2.80 3.46 1.5E-14
D805_0698 hypothetical protein 1.19 4.02 0.00369
D805_0837 putative TraA-like conjugal transfer protein 2.75 3.13 0.00038
D805_0885 Ferric iron ABC transporter, iron-binding protein 1.63 2.52 0.00624
D805_0928 hypothetical protein 1.90 2.59 0.00374
D805_0948 hypothetical protein 2.08 2.96 0.00118
D805_1220 hypothetical protein 2.60 3.03 0.00015
D805_1313 Methionine ABC transporter permease protein 1.52 2.03 0.04091
D805_1771 hypothetical protein 1.01 4.56 0.01571
  1. a logFC log2 fold change, b logCPM log2 counts per million, c FDR false discovery rate