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Table 1 Bifidobacterium thermophilum RBL67 genes higher expressed in co-culture with N-15 compared to mono-culture

From: Bifidobacterium thermophilum RBL67 impacts on growth and virulence gene expression of Salmonella enterica subsp. enterica serovar Typhimurium

Locus tag Function logFCa logCPMb FDRc
D805_0058 Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) −1.52 4.09 4E-06
D805_0077 hypothetical protein −1.17 6.36 4.8E-07
D805_0155 Transcriptional regulator, MarR family −1.95 6.80 1.2E-17
D805_0156 hypothetical protein −1.50 3.64 0.00401
D805_0157 Lipid A export ATP-binding/permease protein MsbA −1.17 8.10 6.2E-06
D805_0382 hypothetical protein −1.13 7.94 1.4E-06
D805_0466 FIG 00672402: hypothetical protein −1.00 7.21 9.5E-08
D805_0503 possible conserved integral membrane protein −1.14 3.08 0.01355
D805_0599 SOS-response repressor and protease LexA (EC 3.4.21.88) −1.24 6.59 7.9E-09
D805_0600 hypothetical protein −2.14 6.18 2.6E-27
D805_0707 Inner membrane protein −1.14 6.16 3.4E-06
D805_1209 Zinc ABC transporter, periplasmic-binding protein ZnuA −1.15 4.69 1.3E-05
D805_1238 Cystathionine beta-synthase (EC 4.2.1.22) −1.23 6.23 2.7E-09
D805_1392 putative aminotransferase −1.23 4.66 1.2E-05
D805_1393 hypothetical protein −1.03 4.30 0.00118
D805_1530 Glutamate 5-kinase (EC 2.7.2.11) −1.08 8.00 3.9E-09
D805_1531 COG0536: GTP-binding protein Obg −1.03 9.16 2.5E-06
D805_1591 DNA recombination protein RmuC −1.27 7.58 3.6E-12
D805_1594 ClpB protein −1.06 8.68 2.1E-06
D805_1600 Maltodextrin glucosidase (EC 3.2.1.20) −1.17 6.23 5.6E-08
D805_1601 ABC-type sugar transport system, permease component −1.85 4.02 3.9E-09
D805_1602 MSM (multiple sugar metabolism) operon regulatory protein −1.68 3.28 1.1E-05
D805_1621 Sortase A, LPXTG specific −1.09 3.52 0.00557
D805_1622 hypothetical protein −1.44 4.42 5.6E-08
D805_1637 COG family: predicted phosphohydrolases −1.63 6.91 1.8E-21
D805_1658 Transcriptional regulator, HxlR family −1.07 4.37 0.00624
D805_1659 Rrf2-linked NADH-flavin reductase −2.01 5.23 2.9E-14
D805_1660 COG2110, Macro domain, possibly ADP-ribose binding module −1.83 4.90 2.4E-16
D805_1678 HspR, transcriptional repressor of DnaK operon −1.08 5.37 4.9E-08
D805_1702 transport protein −1.80 6.58 3.5E-23
  1. a logFC log2 fold change, b logCPM log2 counts per million, c FDR false discovery rate