Table 1 Bifidobacterium thermophilum RBL67 genes higher expressed in co-culture with N-15 compared to mono-culture
Locus tag | Function | logFCa | logCPMb | FDRc |
|---|---|---|---|---|
D805_0058 | Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1) | −1.52 | 4.09 | 4E-06 |
D805_0077 | hypothetical protein | −1.17 | 6.36 | 4.8E-07 |
D805_0155 | Transcriptional regulator, MarR family | −1.95 | 6.80 | 1.2E-17 |
D805_0156 | hypothetical protein | −1.50 | 3.64 | 0.00401 |
D805_0157 | Lipid A export ATP-binding/permease protein MsbA | −1.17 | 8.10 | 6.2E-06 |
D805_0382 | hypothetical protein | −1.13 | 7.94 | 1.4E-06 |
D805_0466 | FIG 00672402: hypothetical protein | −1.00 | 7.21 | 9.5E-08 |
D805_0503 | possible conserved integral membrane protein | −1.14 | 3.08 | 0.01355 |
D805_0599 | SOS-response repressor and protease LexA (EC 3.4.21.88) | −1.24 | 6.59 | 7.9E-09 |
D805_0600 | hypothetical protein | −2.14 | 6.18 | 2.6E-27 |
D805_0707 | Inner membrane protein | −1.14 | 6.16 | 3.4E-06 |
D805_1209 | Zinc ABC transporter, periplasmic-binding protein ZnuA | −1.15 | 4.69 | 1.3E-05 |
D805_1238 | Cystathionine beta-synthase (EC 4.2.1.22) | −1.23 | 6.23 | 2.7E-09 |
D805_1392 | putative aminotransferase | −1.23 | 4.66 | 1.2E-05 |
D805_1393 | hypothetical protein | −1.03 | 4.30 | 0.00118 |
D805_1530 | Glutamate 5-kinase (EC 2.7.2.11) | −1.08 | 8.00 | 3.9E-09 |
D805_1531 | COG0536: GTP-binding protein Obg | −1.03 | 9.16 | 2.5E-06 |
D805_1591 | DNA recombination protein RmuC | −1.27 | 7.58 | 3.6E-12 |
D805_1594 | ClpB protein | −1.06 | 8.68 | 2.1E-06 |
D805_1600 | Maltodextrin glucosidase (EC 3.2.1.20) | −1.17 | 6.23 | 5.6E-08 |
D805_1601 | ABC-type sugar transport system, permease component | −1.85 | 4.02 | 3.9E-09 |
D805_1602 | MSM (multiple sugar metabolism) operon regulatory protein | −1.68 | 3.28 | 1.1E-05 |
D805_1621 | Sortase A, LPXTG specific | −1.09 | 3.52 | 0.00557 |
D805_1622 | hypothetical protein | −1.44 | 4.42 | 5.6E-08 |
D805_1637 | COG family: predicted phosphohydrolases | −1.63 | 6.91 | 1.8E-21 |
D805_1658 | Transcriptional regulator, HxlR family | −1.07 | 4.37 | 0.00624 |
D805_1659 | Rrf2-linked NADH-flavin reductase | −2.01 | 5.23 | 2.9E-14 |
D805_1660 | COG2110, Macro domain, possibly ADP-ribose binding module | −1.83 | 4.90 | 2.4E-16 |
D805_1678 | HspR, transcriptional repressor of DnaK operon | −1.08 | 5.37 | 4.9E-08 |
D805_1702 | transport protein | −1.80 | 6.58 | 3.5E-23 |