Table 2 Summary of Phage related regions identified by PHAST in the 5 genomes. Phage sequences identified in this study
PHAST region identifier | Length of prophage | PHAST score | No of predicted CDS | Relative position on genome | Predicted Phage | GC content | Location on Genomic scaffolds |
|---|---|---|---|---|---|---|---|
C difficile P29 genome | |||||||
 Region_4 | 97.4Kb | 150 | 126 | 1732045-1829500 | PHAGE_Clostr_CDMH1_NC_024144 | 28.7 | 27.1, 30.1, 40.1, 34.1, 36,1, 5.1, 47.1 and 16.1 |
 Region_8 | 113.6Kb | 150 | 101 | 3773336-3886941 | PHAGE_Geobac_virus_E2_NC_009552 | 40.8 | 5.1, 19.1 and 22.1 |
 Region_9 | 52.8Kb | 140 | 65 | 4233532-4286418 | PHAGE_Clostr_phiCD6356_NC_015262 | 29.9 | 8.1, 26.1, 41.1 and 42.1 |
 Region_10 | 21.3Kb | 100 | 22 | 4290994-4312349 | PHAGE_Clostr_phiC2_NC_009231 | 36.4 | In over 20 very small scaffolds |
C. difficile H3 genome | |||||||
 Region_2 | 41.1Kb | 150 | 63 | 925289-966449 | PHAGE_Clostr_phiCD6356_NC_015262 | 28.5 | 22.1 and 31.1 |
 Region_3 | 50.1Kb | 110 | 66 | 1114600-1164714 | PHAGE_Clostr_phiC2_NC_009231 | 28.1 | 18.1 and 5.1 |
 Region_6 | 31.5Kb | 110 | 47 | 4070500-4102080 | PHAGE_Clostr_phiC2_NC_009231 | 29.4 | 26.1, 27.1, 28.1, 32.1, 33.1 |
C. difficile 5.3 genome | |||||||
 Region_3 | 57.9Kb | 140 | 87 | 1555612-1613526 | PHAGE_Clostr_phiC2_NC_009231 | 28.6 | 1.1 |
 Region_4 | 45.1Kb | 150 | 49 | 1741883-1787019 | PHAGE_Clostr_phiSM101_NC_008265 | 27.2 | 1.1 |
C.difficle 19.3 genome | |||||||
 Region_3 | 56.8Kb | 140 | 74 | 1700180-1757059 | PHAGE_Clostr_phiC2_NC_009231 | 28.8 | 1.1 |
C. difficile 22.1 genome: | |||||||
 Region_3 | 56.8Kb | 140 | 74 | 1703858-1760737 | PHAGE_Clostr_phiC2_NC_009231 | 28.8 | 3.1 |