Gene | Primers/Probes | PCR-product (bp) | Acc-number | Gene region (bp) |
---|---|---|---|---|
tcdA | tcdA F: 5-´ATTCCAATACAAGYCCTGTAGAAAA-3´ | 85 | AM180355 | 796102–796186 |
tcdA R: 5- TTTATGTATTCAAGARCAATATCACTGACT-3´ | ||||
tcdA-S: 5´Fam-RATTTACATTTTGTATGGATAGGTGGAG-BHQ-1-3´ | ||||
tcdB | tcdBF: 5´-AACAGGTGTATTTAGTACAGAAGATGGATT-3´ | 85 | AM180355 | 793077–793161 |
tcdBR: 5´-AATTGCTTCTCCTTCTAGGTTTTCAT-3´ | ||||
tcdB-S: 5´-Hex-AAATATTTTGCCCCAGCTAATACACTT-BHQ-1-3´ | ||||
tcdB027a | tcdBF: 5´-AACAGGTGTATTTAGTACAGAAGATGGATT-3´ | 85 | FN665654 | 708928–709012 |
027tcdBR*: 5´-AATTGCTTCCCCCTCTAGATTTTCAT-3´ | ||||
027tcdB-S:5´-Hex-AAATATTTTGCTCCAGCAGATACACTT-BHQ-1-3´ | ||||
16S | CdF: 5´-TGTACACACGGATAACATACCGAAA-3´ | 131 | AM180355 | 125189–125289 |
CdR:5´-CCGTTACCTTACCAACTAGCTAATCA-3´ | ||||
CdS5´-Fam-CATCTCTTGAATATCAAAGGTGAGCCAGTACAGG-BHQ-1-3´ | ||||
cdtB | cdtBfor: 5´GATGATCCATTTATCCCAAATAACAA-3´ | 132 | FN665654 | 2833044–2833175 |
cdtBrev:5´GTCCTTAATAGTATATCCATTTCGTTCATATG-3´ | ||||
cdtBS:5´Hex-TTCTTTGACCCAAAGTTGATGTCTGATTGGG-BHQ-1-3´ | ||||
slpA (Kato et al. 2004) | slpAcom22 : 5'-GCWGTYTCTATTCTATCDTYWCC-3' | 23 | AM180355 | 3253526–3254737 |
slpAcom19 : 5'-GTTGGGAGGAATTTAAGRAAtG-3' | 22 |