Table 2 Sequencing statistics
| Â | Bases | Reads | Mean read length | GC % | |||
|---|---|---|---|---|---|---|---|
Sequencing data | |||||||
PGM raw data | 1Â GB | 5630598 | 155 (bp) | 38 | |||
Post trimmomatic data | 974Â MB | 5240830 | 185 (bp) | 38 | |||
Assembled contigs | |||||||
Assemblies | # Submitted reads | Minimum read length | # Contigs | # Contigs >500Â bp | N50 contig size | Mean contig size | Largest contig size |
Assembly Aa | 5240830 | 50 (bp) | 54246 | 21998 | 3810 (bp) | 1807 (bp) | 171327 (bp) |
Assembly Ba | 5240830 | 50 (bp) | 278958 | 30987 | 1226 (bp) | 1115 (bp) | 18073 (bp) |
Assembly Ca | 1984110 | 220 (bp) | 27994 | 14915 | 4380 (bp) | 1899 (bp) | 75139 (bp) |