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Table 2 Summary of histidine decarboxylase BLAST analysis

From: High-throughput DNA sequencing to survey bacterial histidine and tyrosine decarboxylases in raw milk cheeses

Cheese

# of Clones

BLAST output

E-value

% Identity

Reblochon

8

Lb. buchneri histidine decarboxylase operon (hdcA gene, hdcB gene, hdcC gene and hisS gene)

0

99 %

Irish Artisanal Cheese B

5

Lb. buchneri histidine decarboxylase operon (hdcA gene, hdcB gene, hdcC gene and hisS gene)

0

99 %

 

1

Lb.sakei hdc gene, partial cds/T. halophilus hdc operon/T. muriaticus phdc/O. oeni hdc operon/Lb. hilgardii hdc operon

0

99 %

Morbier

7

Lb. buchneri histidine decarboxylase operon (hdcA gene, hdcB gene, hdcC gene and hisS gene)

0

99 %

 

1

Lb.sakei hdc gene, partial cds/T. halophilus hdc operon/T. muriaticus phdc/O. oeni hdc operon/Lb. hilgardii hdc operon

0

96 %

Tête De Moine

8

Lb. buchneri histidine decarboxylase operon (hdcA gene, hdcB gene, hdcC gene and hisS gene)

0

99 %

Pecorino Sardo

7

Lb. buchneri histidine decarboxylase operon (hdcA gene, hdcB gene, hdcC gene and hisS gene)

0

99 %

 

1

Lb.sakei hdc gene, partial cds/T. halophilus hdc operon/T. muriaticus phdc/O. oeni hdc operon/Lb. hilgardii hdc operon

0

99 %

Ossau-Iraty

8

Lb.sakei hdc gene, partial cds/T. halophilus hdc operon/T. muriaticus phdc/O. oeni hdc operon/Lb. hilgardii hdc operon

0

99 %

  1. Summary of homologues of histidine decarboxylase (hdc) gene fragments detected in hdc positive cheeses using Sanger sequencing of cloned amplicons