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Table 5 Genome sequences of Vibrio strains used in this studya

From: Multiplex PCR for detection of the Vibrio genus and five pathogenic Vibrio species with primer sets designed using comparative genomics

Strain Reference sequenceb Genome size (Mb) Number of genes used in this study (on ffn file) Release Date Status of genome project
V. parahaemolyticus RIMD 2210633 NC_004603.1, NC_004605.1 5.17 4832 2003/03/05 Completed
V. cholerae O1 biovar EI Tor str. N16961 NC_002505.1, NC_002506.1 4.03 3834 2000/06/14 Completed
V. cholerae M66 NC_012578.1, NC_012580.1 3.94 3693 2009/04/20 Completed
V. cholerae MJ 1236 NC_012667.1, NC_012668.1 4.24 3772 2009/05/04 Completed
V. cholerae O395 NC_009456.1, NC_009457.1 4.13 3998 2007/05/08 Completed
V. vulnificus CMCP6 NC_004459.3, NC_004460.2 5.13 4433 2002/12/22 Completed
V. vulnificus MO6 24 O NC_014966.1, NC_014965.1 5.01 4562 2011/01/24 Completed
V. vulnificus YJ016 NC_005140.1, NC_005139.1 5.26 5023 2003/10/01 Completed
V. fischeri MJ11 NC_011184.1, NC_011186.1 4.5 4039 2008/08/28 Completed
V. fischeri ES114 NC_006841.2, NC_006840.2 4.27 3817 2005/02/11 Completed
V. anguillarum 775 NC_015637.1, NC_015633.1 4.05 3732 2011/06/09 Completed
V. species Ex25 NC_013456.1, NC_013457.1 5.09 4518 2009/11/03 Completed
V. harveyi ATCC BAA-1116 NC_009783.1, NC_009784.1 6.06 6041 2007/08/28 Completed
V. splendidus LGP32 NC_011753.2, NC_011744.2 4.97 4432 2008/12/17 Completed
V. alginolyticus 12G01 NZ_CH902589 ~ NZ_CH902598c 5.16   2006/04/06 Scaffolds
V. mimicus MB-451 NZ_ADAF01000001 ~ NZ_ADAF01000003C 4.31   2009/10/23 Scaffolds
  1. aThe information in this table was updated in June 2012. Fourteen genome shotgun sequences of Vibrio strains are not listed in this table
  2. bCompleted genome sequences were obtained from genomes on the NCBI site (ftp://ftp.ncbi.nlm.nih.gov/genomes/) in December 2011
  3. cThe genome sequences of V. alginolyticus and V. mimicus were not completed. Scaffolds sequence data were obtained from the NCBI site and used for comparative genomics in this study