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Table 1 Characteristics of the six loci used in the analyses for the 83 F. columnare strains

From: A multilocus sequence analysis scheme for characterization of Flavobacterium columnare isolates

Locus Fragment size(bp) No. of alleles Allelic diversity GC S dN/dS Tajima’s D
trpB 626 5 0.72 0.441 49 0.046 0.0283 2.45a
rpoD 386 3 0.53 0.348 10 0.000 0.0117 3.38a
tuf 608 4 0.29 0.399 3 0.126 0.0005 −0.85b
atpA 645 4 0.56 0.425 3 0.000 0.0015 0.52b.
dnak 643 2 0.27 0.362 1 0.000 0.0004 0.43b.
gyrB 598 3 0.37 0.369 2 0.000 0.0006 −0.07b.
Concatenated 3509 9 0.74 0.390 68 - - -
Average - - 0.4604 - - - - -
  1. GC Guanine + Cytosine content; S number of segregating sites; dN/dS the ratio of non-synonymous to synonymous substitutions; nucleotide diversity; Tajima’s D neutrality test values
  2. astatistically significant, and bnon-significant value