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Table 1 Mutations accumulated in Pseudomonas aeruginosa lineages during infection

From: Within-host microevolution of Pseudomonas aeruginosa in Italian cystic fibrosis patients

Lineage IT01 IT02 IT03 IT05 IT06
SNPs 193 38 21 3 48
Missense 104 17 7 1 25
Nonsense 7 1 0 1 2
Silent 53 5 7 1 11
Intergenic 29 15 7 0 10
Intragenic indels 46 23 7 4 43
Intergenic indels 18 6 3 2 13
dN/dS 0.70 1.20 0.33 0.67 0.82
Probability of dN/dS = 1 3.61E-05 8.19E-01 3.95E-04 4.23E-01 1.70E-01
Maximum-parsimonious SNP events 193 39 21 3 48
Parsimony consistency 1.00 0.97 1.00 1.00 1.00