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Table 1 Mutations accumulated in Pseudomonas aeruginosa lineages during infection

From: Within-host microevolution of Pseudomonas aeruginosa in Italian cystic fibrosis patients

Lineage

IT01

IT02

IT03

IT05

IT06

SNPs

193

38

21

3

48

Missense

104

17

7

1

25

Nonsense

7

1

0

1

2

Silent

53

5

7

1

11

Intergenic

29

15

7

0

10

Intragenic indels

46

23

7

4

43

Intergenic indels

18

6

3

2

13

dN/dS

0.70

1.20

0.33

0.67

0.82

Probability of dN/dS = 1

3.61E-05

8.19E-01

3.95E-04

4.23E-01

1.70E-01

Maximum-parsimonious SNP events

193

39

21

3

48

Parsimony consistency

1.00

0.97

1.00

1.00

1.00