Fig. 3
Unrooted phylogenetic tree (Neighbor-Joining) for six conserved regions in pXOCgx01. a. Region I; b. Region II; c. Region III; d. Region IV; e. Region V; f. Region VI. DNA sequences of other genomes were abstracted from Genbank. The specific locations are summarized in Additional file 5. Abbreviation of genome names: Xcc B1459 plasmid I: Xanthomonas campestris pv. campestris B1459 plasmid I; xfu plasmid pla: Xanthomonas fuscans subsp. fuscans str. 4834-R plasmid pla; xac plasmid pXAC33: Xanthomonas axonopodis pv. citri str. 306 plasmid pXAC33; xac plasmid pXAC64: Xanthomonas axonopodis pv. citri str. 306 plasmid pXAC64; xcv plasmid pXCV38: Xanthomonas campestris pv. vesicatoria str. 85–10 plasmid pXCV38; byi plasmid byi_3p: Burkholderia sp. YI23 plasmid byi_3p; rsm plasmid pRSC35: Ralstonia solanacearum CMR15 plasmid pRSC35; X. citri plasmid pXcB: Xanthomonas citri plasmid pXcB; avd: Azotobacter vinelandii CA6; pzu: Phenylobacterium zucineum HLK1; pau: Pseudomonas aeruginosa UCBPP-PA14; psd: Pseudoxanthomonas spadix BD-a59; smz: Stenotrophomonas maltophilia D457; sml: Stenotrophomonas maltophilia K279a; xop: Xanthomonas oryzae pv. oryzae PXO99A; xcv plasmid pXCV183: Xanthomonas campestris pv. vesicatoria plasmid pXCV183; xca: Xanthomonas campestris pv. campestris complete genome, strain B100; xci plasmid pXcaw58: Xanthomonas citri subsp. citri Aw12879 plasmid pXcaw58