Fig. 2
Circular map of plasmid pXOCgx01. The outer circle shows predicted coding sequences. Different colors represent different putative functions: gray, (conserved) hypothetical protein; red, intergenic regions with putative functions as the origin of transfer (oriT), origin of vegetative replication (oriV), and plasmid replication relative proteins as kfrA and parA proteins; green, transmembrane proteins and conjugal transfer proteins; blue, T4SS locus; maroon, metal resistance relative proteins, like czcABC locus and metal-binding proteins; teal, other proteins as CcgAII protein, putative PemK-like protein, plasmid stable inheritance protein, yecR. Circles 2 through 10 depict nine other plasmid or chromosome genomes owning conserved regions in pXOCgx01 as determined by Blastp (cutoff of 1e-5). Second circle, plasmid I from Xanthomonas campestris pv. campestris B1459; third circle, plasmid pla from Xanthomonas fuscans subsp. fuscans str. 4834-R; fourth circle, pXAC64 from Xanthomonas axonopodis pv. citri str. 306; fifth circle, pXCV38 from Xanthomonas campestris pv. vesicatoria str. 85–10; sixth circle, Pseudomonas aeruginosa UCBPP-PA14; seventh circle, Stenotrophomonas. maltophilia K279a; eighth circle, Pseudoxanthomonas spadix BD-a59; ninth circle, pXCV183 from Xanthomonas campestris pv. vesicatoria str. 85–10; tenth circle, Xanthomonas oryzae pv. oryzae PXO99A. Within each circle of the nine, the darkest color indicates nucleotide identity exceeding 70 % whereas the lightest color represents identity exceeding 40 %. Eleventh circle, G + C content. Twelfth circle, GC skew. The circular plasmid diagram was generated using BRIG