Clonal group | Serotype | No. of strains | Source | Presence or absence of: | IS element upstream of per | Presence or absence of: | perBC-EAF PCR product | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
bfpA (probe) | bfpA (PCR) | bfpG (PCR) | trcP (probe) | per (probe) | perA (PCR) | EAF (PCR) | orf35–36 (probe) | orf61–62 (probe) | ||||||
EPEC1 | O55:H6, NM | 13 | Patients | + | + | + | – | IS1(νξ) | + | + | + | + | + | 3.9-kb |
EPEC1 | O55:NM | 1 | Control | + | + | + | – | IS1(νξ) | + | + | + | + | + | 3.9-kb |
EPEC1 | O86:NM, H34 | 2 | Patients | + | + | + | + | IS1(νξ) | + | + | + | + | + | 3.9-kb |
EPEC2 | O111:NM | 5 | Patients | + | + | + | + | IS1(νξ) | + | + | + | + | + | 3.9-kb |
EPEC2 | O111:H2 | 4 | Patients | + | + | + | + | IS1(νξ) | + | + | + | + | + | 3.9-kb |
EPEC1 | O119:H6, NM | 16 | Patients | + | + | + | – | IS1(νξ) | + | + | – | + | – | 2.2-kb |
EPEC1 | O119:H6 | 1 | Patient | – | + | + | – | IS1(νξ) | – | + | – | + | – | 2.2-kb |
EPEC1 | O119:H6, NM | 5 | Patients | + | + | + | – | IS1(νξ) | + | + | – | – | + | 2.2-kb |
EPEC1 | O119:H6 | 2 | Controls | + | + | + | + | IS1(νξ) | + | + | + | + | – | 3.9-kb |
EPEC1 | O119:H6 | 1 | Control | + | + | + | + | IS1(νξ) | – | + | + | + | – | 3.9-kb |
EPEC1 | O127:H6, NM | 3 | Controls | + | + | + | – | IS1(νξ) | + | + | + | + | – | 3.9-kb |
EPEC1 | O127:NM | 1 | Patient | + | + | + | – | IS1(νξ) | + | + | + | + | – | 3.9-kb |
Unknown | O2:H2, H45 | 2 | Patients | + | + | + | – | IS1(νξ) | + | + | + | + | – | 3.9-kb |
Unknown | O101:H33 | 1 | Control | + | + | + | – | IS1(νξ) | + | + | + | + | – | 3.9-kb |
Unknown | O145:HNT | 1 | Control | + | + | + | – | IS1(νξ) | + | + | – | + | – | 2.2-kb |
Unknown | O162:NM, H33 | 2 | Patients | + | + | + | – | IS1(νξ) | + | + | + | + | – | 3.9-kb |
Unknown | O157:HND | 2 | Patients | + | + | + | – | IS1(νξ) | + | + | – | + | – | 2.2-kb |
Unknown | ONT:H45; HND | 3 | Patients | + | + | + | – | IS1(νξ) | + | + | + | + | – | 3.9-kb |
Unknown | ONT:HND | 5 | Patients | + | + | + | – | IS1(νξ) | + | + | – | + | – | 2.2-kb |
EPEC1 | E2348/69 (O127:H6) | + | + | + | – | IS1(νξ) | + | + | + | + | + | 3.9-kb | ||
EPEC2 | B171 (O111:NM) | + | + | + | + | IS1(νξ) | + | + | + | + | + | 3.9-kb |