Skip to main content
Fig. 2 | BMC Microbiology

Fig. 2

From: Lignocellulose-converting enzyme activity profiles correlate with molecular systematics and phylogeny grouping in the incoherent genus Phlebia (Polyporales, Basidiomycota)

Fig. 2

Maximum likelihood phylogeny and exon-intron structure of partial gapdh nucleotide sequences of the Phlebia isolates. (a) Maximum likelihood phylogeny of the Phlebia isolates showing the phylogroups formed. 5.8S, partial LSU, and partial sequences from two protein-encoding genes (gapdh, rpb2) were concatenated for an alignment, and the phylogenetic analysis was performed using RAxML v. 7.2.8. and 100x bootstrapping. Sequences of related Agaricomycetes species (taxons without FBCC-identifier) were retrieved from JGI MycoCosm database [76] and NCBI (http://www.ncbi.nlm.nih.gov/). Species names are followed by isolate culture collection identifiers. The sequences from species Heterobasidion irregulare (Russulales, Basidiomycota) were used as an outgroup. Bootstrap values higher than 50 % are indicated for the nodes. Scale bar represents 0.01 nucleotide substitutions per position. (b) Exon-intron structure of partial gapdh nucleotide sequences from the Phlebia phylogroups studied. Black and white areas indicate exons and introns, respectively

Back to article page